LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco4g00883	ATGAGTGACAAAGAAAAGTTTGAGGTGGATAGAAGCGAGGATCCTATGGGTTATTCTAGTGGTATGCACTCGGATTGGAGATTTGGGGGTGCAAATCTTGCTAATTCTTCTGCAGGTTTGGTAGCCATGGGAAATTCTATGAATGCCAGCAGAGGGGATTTAATTGGTTCGTCTTCATGTTCCTCTGCTTCAATGGTGGACTCTTTTGGTCCAAGCTACTGGGACAACTCCCCCGGCTCCCAAAACCTGGGATTTTGTGACTTTAATGTCCACAACAATGGAGGTTCTTCAAATACTGCGGGAATAAGAAAAGATGGCTTTGGCTTTGGAAGAGTAGGTCAGGATCATCATGGAACACTTGATATGGCTTGGAACCCTGCTAATTCTATGTTACCAAATGGCCCAGGGATGTTTCCGCACAGTTTATCTCAGTTTCCGACTGATTCTGGATTCATTGAGAGAGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTACTGATATGGTGAACTCATATGGTATTGCTCAATCAACAGGGGTTTATGGAGCAAGAGATGCTATTGCAGGTCATGGGTTGAAATCTGTAACTGGAGGGCAATCTCAAGGAGGTGAAATGAATGTAGTTGAAGCTACTAAAGATTTGCCTCCATCTGTTGAGCATCTGGCTTCTAAAGGAAGCCCTCTCAAGAGTGATAGAAGAAGTGAAGGTCTTGTTATGTCTCAAGATGATAGGAAGCTATCTCTTGTTAGGCCAGCTAATGAGTCGGATAGAGCTGAATCTAGTGATGATGATGGTGGTGGCCAGGATGATTCTCCAATCTTGGAAGGTGCTAGTGGAGAGCCTTCTATCAAAGGGCTAAAGTCAAAGAAAAGGAAAAGAAGTGGGCAGGATGCTGATAATGATATAGGCAATGGAGCTCCAGAAATTCCTAATGAAGCTACAAAGGACAGCTCTGAGAATCAACAAAAGGTAGATCATCAACCAACTCCAGCAGCCAAGGCTTCTGGGAAGAATGCCAAACTGGGGTCTCAAGCTTCTGATCCCCCTAAGGAGGAATACATACATGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTTAGGAGGGAAAAGATAAGTGAAAGGATGAAGTTTCTTCAAGACCTTGTACCGGGATGCAGCAAGGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAATCACTTCAGAGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACAGTTAATCCGCGGCTGGAATTTAATATTGAAGGACTTCTCGGAAAAGATATTCTTCAACATCGGCCCGGTCCTTCTTCTGGACTAGGGTTTCCTCTAGATATATCCATGGCTTTTCCTCCAATACATCCATCTCAACCAGGGCTGATTCATCCTATTATTCCCAACATGGTAAACTCAGCTGACATTCTTCAAAGAAACATCCATCAACAGTTAGCTCCCTTGAATAGTGGGTTCAAGGAGCCAAATCAGCTATCGGATGTATGGGAGGATGAGCTTCACAACGTCGTACAAATGAGTTTTGCGACAACTGCTCCCCTCAGTAACCAAGATGTTGATGGTACTGTGTCAGCAAGTCAGATGAAAGTTGAACTTTGA	1653	0.4404	MSDKEKFEVDRSEDPMGYSSGMHSDWRFGGANLANSSAGLVAMGNSMNASRGDLIGSSSCSSASMVDSFGPSYWDNSPGSQNLGFCDFNVHNNGGSSNTAGIRKDGFGFGRVGQDHHGTLDMAWNPANSMLPNGPGMFPHSLSQFPTDSGFIERAARFSCFSGGNFTDMVNSYGIAQSTGVYGARDAIAGHGLKSVTGGQSQGGEMNVVEATKDLPPSVEHLASKGSPLKSDRRSEGLVMSQDDRKLSLVRPANESDRAESSDDDGGGQDDSPILEGASGEPSIKGLKSKKRKRSGQDADNDIGNGAPEIPNEATKDSSENQQKVDHQPTPAAKASGKNAKLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLEFNIEGLLGKDILQHRPGPSSGLGFPLDISMAFPPIHPSQPGLIHPIIPNMVNSADILQRNIHQQLAPLNSGFKEPNQLSDVWEDELHNVVQMSFATTAPLSNQDVDGTVSASQMKVEL	550

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco4g00883	550	MobiDBLite	consensus disorder prediction	226	241	-	-
	Phco4g00883	550	MobiDBLite	consensus disorder prediction	312	329	-	-
	Phco4g00883	550	SMART	finulus	369	419	IPR011598	GO:0046983
	Phco4g00883	550	CDD	bHLH_AtBPE_like	353	438	-	-
	Phco4g00883	550	MobiDBLite	consensus disorder prediction	218	350	-	-
	Phco4g00883	550	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	361	431	IPR036638	GO:0046983
	Phco4g00883	550	Gene3D	-	360	434	IPR036638	GO:0046983
	Phco4g00883	550	PANTHER	STEROL REGULATORY ELEMENT-BINDING PROTEIN	258	478	IPR024097	GO:0006355
	Phco4g00883	550	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	363	413	IPR011598	GO:0046983
	Phco4g00883	550	Pfam	Helix-loop-helix DNA-binding domain	366	414	IPR011598	GO:0046983
	Phco4g00883	550	FunFam	Basic helix-loop-helix transcription factor	360	432	-	-
	Phco4g00883	550	MobiDBLite	consensus disorder prediction	248	265	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco4g00883	Phco-Chr4	6946194	6949206	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Phco4g00883		HLH	7.1e-06	No_clan