Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00877 ATGCTTTCTGGGGCTCCTCGATCAAATCTCAGACAGGTGAAGTCATTCTTACGTGATGAATTCCCATCCAAAGATGACAAGGAATATGAAGATCCTCTTCTAGCAAAGACATTGCCAATATGGCCTTCAACTGCAGATGAATATGATGATTTTCCACCTGGTTTTGAAGGAAATCATTTTCTGAATCGATCAAAGGAAGAATTCTCTCACCTTTCTCAAATTAAATGGGAACCTCCTCCTTCGTTTGCTTTGAATTCGAAGTGGAGTGTAGCAACGGGTGAAGAAAGTAGAGAGAGAAATGTTCAAAGTCTAAGAGAAATGAGAGTGCTTGAAGCAGTTTATCCTCGTATTTCATCAATTCCTTCCAGCCCTTCGGTTTCTCTTGATGTGGAGATGGAATCTTATGATGATAGCCTCACTCCTCATGTCCCTCTCATTCCCATTGAGGAACTGGTATCGTCGCAAGATAGAAAACATGATGTTACAGTCACAAAATATGCAGACTCTTCCTGCAATTTGCCGACACAGATATTGCAAAAATATATTCCGCTAGCAAGATCCTCTTCGGAGGTAGATTTATTTGCAGCTTATGCTGCTGTTGCAGCTGCCATCATGAAAAGCAATGAGGAAAACTGCTTGATTGATATAAATTTCCTCCTTGAAACAGTAAATGACCCAATAAAAATTGGAAACTTAATTGAAGATTACATATCTGCCATTACCACCACCCCTTTTGATACACCTACAAGAACTCTGAGTATACCCACTTCTTGTAATACCCCTGATATTTCAGCAGTTCCATTGACTACCCCTGCAAGCAAAGCAGCTGCGTTTGATTCATTGCTCTCCCCCACACCTGAAAAATCAACAATTTCATCTGTTTCAATAGAGACAACCACACTTGCAAGTGGAGGTCCTTTGAAAAGTTCTGAATCTTCTAAAACAGAAGCAATTAACACAGTAACGCAACCAGTGGTAAAGCGAGCAGCACCACTGGAAAGCCAAAGAAAGAGTTTGTCCAAACACTTGCAATCCAGTGCTAGTTCATTGTCTTCTCAACGCGGGGTTGTGAAAGATGTCAACTATTATCTGAATCTTGTTAGAGATCATGATAATTATAAGAAAGACATGCGCAGTCGTAATAATTTTCAAGATTCGAAAAAACCACGTAACAACACCACTAATCAGGAGGAGGCAAAATTCAAGACTCATAAACCATGCAAATATTTTAAAACTTCAAGGGGTTGTCGTAATGGTTCTAATTGTCGTCATCAGCACGAAATGTCAGTGTGGAGGATGTAA 1302 0.3994 MLSGAPRSNLRQVKSFLRDEFPSKDDKEYEDPLLAKTLPIWPSTADEYDDFPPGFEGNHFLNRSKEEFSHLSQIKWEPPPSFALNSKWSVATGEESRERNVQSLREMRVLEAVYPRISSIPSSPSVSLDVEMESYDDSLTPHVPLIPIEELVSSQDRKHDVTVTKYADSSCNLPTQILQKYIPLARSSSEVDLFAAYAAVAAAIMKSNEENCLIDINFLLETVNDPIKIGNLIEDYISAITTTPFDTPTRTLSIPTSCNTPDISAVPLTTPASKAAAFDSLLSPTPEKSTISSVSIETTTLASGGPLKSSESSKTEAINTVTQPVVKRAAPLESQRKSLSKHLQSSASSLSSQRGVVKDVNYYLNLVRDHDNYKKDMRSRNNFQDSKKPRNNTTNQEEAKFKTHKPCKYFKTSRGCRNGSNCRHQHEMSVWRM 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00877 433 MobiDBLite consensus disorder prediction 337 351 - -
Phco4g00877 433 ProSiteProfiles Zinc finger C3H1-type profile. 401 429 IPR000571 GO:0046872
Phco4g00877 433 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 10 429 - -
Phco4g00877 433 MobiDBLite consensus disorder prediction 373 402 - -
Phco4g00877 433 MobiDBLite consensus disorder prediction 330 351 - -
Phco4g00877 433 SUPERFAMILY CCCH zinc finger 406 427 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00877 Phco-Chr4 6905115 6906903 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco4g00877 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00877 4 6905115 6906903 Phco4g00877 4 6905115 6906903 ECH
Phco8g00419 8 3786279 3792128 Phco4g00877 4 6905115 6906903 ECH
Phco4g00877 4 6905115 6906903 Phco8g00419 8 3786279 3792128 PCT