Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00827 ATGGAAGAGGTGTGGAAAGACATAAACCTTGCTACCTTAAATGACCAGGTCACTACCACCCACTCCAACTTGGGAGGAGTAATCCTCCAAGACTTTCTCGCTCGACCCTTCGCCATAGACCCACCAAATGCCATTCTTCCCTCACAAACCACTTCCTCTCTCTACGGCCCCCCCTCCTCCCCGGCCCCACCTCTCCTCACTGCTCTCAGCTTGAGCTCTCACCCCCACCTCCTTTTCGACCATCTCACACACAAACCCTCACACCCCCGCCACCACCACCACCACCACCACCCTCCACCCTCCACCCTCTCTTCCTTCACCACCCCTCCCCCCTCCTCCTTAGGCACCAAAAGATTACCAGAACCCGATTGCAACCTCGGTGACAGAAGAAACAAGCGCATGATCAAGAATCGCGAGTCTGCTGCACGATCGCGGGCTTACACGAATGAACTGGAGGTAGAAGTGGAGCAATTAAAGGAAGAGAATGCAAGGCTGAAAAGGCAGCAAAAACAGTTGAATGAAGTTGCACGCAGTGAGCAAAAGAAGAAGGGAAGCCTACATCGAGCATCTACAGCTCCATTTTGA 585 0.5333 MEEVWKDINLATLNDQVTTTHSNLGGVILQDFLARPFAIDPPNAILPSQTTSSLYGPPSSPAPPLLTALSLSSHPHLLFDHLTHKPSHPRHHHHHHHPPPSTLSSFTTPPPSSLGTKRLPEPDCNLGDRRNKRMIKNRESAARSRAYTNELEVEVEQLKEENARLKRQQKQLNEVARSEQKKKGSLHRASTAPF 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00827 194 CDD bZIP_plant_BZIP46 129 179 - -
Phco4g00827 194 MobiDBLite consensus disorder prediction 122 148 - -
Phco4g00827 194 MobiDBLite consensus disorder prediction 49 68 - -
Phco4g00827 194 MobiDBLite consensus disorder prediction 85 99 - -
Phco4g00827 194 SMART brlzneu 125 182 IPR004827 GO:0003700|GO:0006355
Phco4g00827 194 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 1 179 IPR043452 GO:0003700|GO:0045893
Phco4g00827 194 MobiDBLite consensus disorder prediction 169 186 - -
Phco4g00827 194 SUPERFAMILY Leucine zipper domain 129 174 IPR046347 GO:0003700|GO:0006355
Phco4g00827 194 Gene3D - 128 181 - -
Phco4g00827 194 Coils Coil 141 182 - -
Phco4g00827 194 MobiDBLite consensus disorder prediction 169 194 - -
Phco4g00827 194 MobiDBLite consensus disorder prediction 80 148 - -
Phco4g00827 194 Pfam bZIP transcription factor 129 175 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00827 Phco-Chr4 6391289 6392233 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco4g00827 bZIP_1 4.8e-08 CL0018