Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00788 ATGTTGGCGAGGCTCGGGTCGCCGATAGATGACTATTCTGTGCCCAGAAGACGAAATCCAACGGTAGATCGAGACACGTACACATTGGGCAGCAGTGGAGATCGAAGGGTGTGGCATGCAACAGCGCATAGAAGAATGAAGGGTGGAGATTCAATGGAAAATAGATGTACACAAGATAAGTCTAAACTCGTGCAGTGTTTGTTTGCAGCAGCAAAAACAAGATCAGAAGAGAAGAACATGGATAATGGAGATGACAAGGAGGAGAGTAGTGAAGGGGAAGCAGTGAATGGGGCTAAAATGGTGCAGAAGATAACGATAATGTTAGTGTGTGGCAAGGGCAAGGGTTCAAGAACAGGGTCATCATCTTCTAGTTTTTGTCAGGCAGATGAATGTGATGTGAAATTGAACATGGCCAAGAGATACAACCGCCGTCACAAGGTTTGTGAGAGACATTCTAAGGCTCCTGTTGTTTTAGTTTCTAGCATTCGTCAGAGGTTCTGCCAACAATGTAGCAAGTTCCATGAACTTGCACAGTTTGATGAGACCAAAAGAAGTTGCAGGAAAACATTGGCCAGAAGAAAAACTCGCACAGACATGTCCTTATAG 606 0.4472 MLARLGSPIDDYSVPRRRNPTVDRDTYTLGSSGDRRVWHATAHRRMKGGDSMENRCTQDKSKLVQCLFAAAKTRSEEKNMDNGDDKEESSEGEAVNGAKMVQKITIMLVCGKGKGSRTGSSSSSFCQADECDVKLNMAKRYNRRHKVCERHSKAPVVLVSSIRQRFCQQCSKFHELAQFDETKRSCRKTLARRKTRTDMSL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00788 201 Gene3D - 116 187 IPR036893 GO:0003677|GO:0005634
Phco4g00788 201 SUPERFAMILY SBT domain 125 196 IPR036893 GO:0003677|GO:0005634
Phco4g00788 201 MobiDBLite consensus disorder prediction 75 95 - -
Phco4g00788 201 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 51 195 IPR044817 GO:0003677
Phco4g00788 201 MobiDBLite consensus disorder prediction 75 93 - -
Phco4g00788 201 Pfam SBP domain 126 197 IPR004333 GO:0003677
Phco4g00788 201 MobiDBLite consensus disorder prediction 1 30 - -
Phco4g00788 201 ProSiteProfiles Zinc finger SBP-type profile. 123 200 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00788 Phco-Chr4 6083958 6085811 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco4g00788 SBP 1.3e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00788 4 6083958 6085811 Phco4g00788 4 6083958 6085811 ECH