Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00772 ATGGGTCTCTGCCTTGCTTCTCTCGCTCCTCGCCAAACACCCTCTAATTCTCTTCCCTATTCCGGTTCAGAGCGTGAAGGCACGAGCGTGAATGGAGGAAGCAGTAGTAGTATCAGTAGCAATAACGCTGTGTTTCCGAGAGTGGAAACGAGGAACTTGAAGCAGTTCAATTTTGCGGATCTGAAAGCAGCAACGAGGAGTTTCAGGTCTGATGCATTGCTTGGAGAAGGGGGTTTTGGGAAAGTTTACAAAGGATGGTTGCATGAGAAGACACTGACACCAACCAAAGCTGGATCTGGAATGGTAGTTGCTGTTAAGAAATTGAATTCAGAGAGTGTGCAGGGGTTTCGAGAGTGGCAGTCAGAAATCAATTTTTTAGGAAGAATTTCTCACCCGAACCTGGTCAAGCTTTTGGGTTACTGTTGTGACGATGTGGAATTTCTACTTGTGTATGAGTTCATGCCAAAGGGAAGCTTGGAGAATCATCTCTTTAGAAGAAATACTAGCACAGAAACACTGTCTTGGAACACCCGAATCAAAATAGTTATTGGTGCAGCTAGAGGCTTGGCTTTCTTACACACCTCAGAAAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATACTACTTGACGAGGATTACAATGCAAAAATTTCAGATTTTGGGTTGGCCAAATTAGGCCCTTCTGGGGGAGATTCACACGTGACTACCAGGATCATGGGCACATATGGGTATGCTGCTCCAGAATACGTTGCAACAGGCCACTTGTATGTGAAGAGTGATGTTTATGCTTTTGGTGTAGTGCTGCTTGAAATTCTGACAGGGTTTAGAGCACTTGATAGAGATCGCCCCTTAGAGCAGCAGAATCTGATTGAATGGGCTAAGCCTTCTCTTTCTGATAAAAGAAAGTTGAAAAGCATAATGGATGAGAGAATAGAGGGTCAGTATTCAACCAAGGCAGCAATGCGAGCAGCACATTTAACTCTAAAATGCCTTCAACGTGACCATAGAAAACGTCCTCCCATGAAAGATGTTCTGGAAACATTGGAACGCATCGAAGCTATCAACAATAGAAGACAATAA 1086 0.4355 MGLCLASLAPRQTPSNSLPYSGSEREGTSVNGGSSSSISSNNAVFPRVETRNLKQFNFADLKAATRSFRSDALLGEGGFGKVYKGWLHEKTLTPTKAGSGMVVAVKKLNSESVQGFREWQSEINFLGRISHPNLVKLLGYCCDDVEFLLVYEFMPKGSLENHLFRRNTSTETLSWNTRIKIVIGAARGLAFLHTSEKQIIYRDFKASNILLDEDYNAKISDFGLAKLGPSGGDSHVTTRIMGTYGYAAPEYVATGHLYVKSDVYAFGVVLLEILTGFRALDRDRPLEQQNLIEWAKPSLSDKRKLKSIMDERIEGQYSTKAAMRAAHLTLKCLQRDHRKRPPMKDVLETLERIEAINNRRQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00772 361 Pfam Protein tyrosine and serine/threonine kinase 72 350 IPR001245 GO:0004672|GO:0006468
Phco4g00772 361 Gene3D Transferase(Phosphotransferase) domain 1 154 361 - -
Phco4g00772 361 CDD STKc_IRAK 74 353 - -
Phco4g00772 361 PANTHER OS01G0588500 PROTEIN-RELATED 41 354 - -
Phco4g00772 361 MobiDBLite consensus disorder prediction 1 41 - -
Phco4g00772 361 FunFam Serine/threonine-protein kinase PBS1 154 361 - -
Phco4g00772 361 ProSitePatterns Protein kinases ATP-binding region signature. 74 107 IPR017441 GO:0005524
Phco4g00772 361 SUPERFAMILY Protein kinase-like (PK-like) 36 350 IPR011009 -
Phco4g00772 361 ProSiteProfiles Protein kinase domain profile. 68 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00772 361 MobiDBLite consensus disorder prediction 9 41 - -
Phco4g00772 361 Gene3D Phosphorylase Kinase; domain 1 29 153 - -
Phco4g00772 361 FunFam Serine/threonine-protein kinase BIK1 34 153 - -
Phco4g00772 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00772 Phco-Chr4 5949500 5951869 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco4g00772 PK_Tyr_Ser-Thr 1.3e-47 CL0016