Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00771 ATGGGTGTCTGTTTTGCTTCCCCCGCTCGAAAACAATCACCCAACTCCACATCCCCTCAATTAGGTTCAGCGCCAGGGAGTGGAGACTTGACAGTATCCTTGGAGAGCGTGGAAGGAAAGCATGAAGTTTCGGAGGAGTCTGGAGTTGTCGGAAGCAGTAGCAATGGCAGTGGCATTGTTTTTCCGAGTGTGGAAATGAGGAGGTTGAAGGAGTTTAGTTTCGCGGAGCTGAAAGCAGCCACGAAGAGTTTCAAGTCGGATGCGTTGCTTGGAGAAGGAGGTTTTGGGAAAGTTTACAAAGGATGGTTGCATGAGAAAACTCTGACACCAACCAAAGCTGGTTCTGGAATCATGGTAGCTATCAAAAAGTTGAAACCCGAAAGTATGCAGGGCCTTCAAGAGTGGCAGTCAGAAATAAATTTTTTAGGAAGAGTTTCTCACCCAAACCTGGTGAAGCTTTTGGGTTACTGCTGTGACGATGAGGAGTTTCTCCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAAACTCATCTATTTTGGAGTGGTAACACAGTACCATTGTCTTGGGACACTCGACTCAAAATAGCTATTGGTGCAGCTCGGGGCTTGACTTACTTGCACACCTCAGAGAAGCAAATCATATATAGAGATTTCAAAGCCTCCAATATACTACTCGATGAGGAGTTCAATTCGAAAATATCAGATTTTGGTTTGGCCAAATTAGGTCCTTCAGTGGGAGATTCACACGTGACTACCAGAATCATTGGAACATATGGCTATGCTGCTCCCGAATACATTGCAACGGGTCACCTTTATGTGAAAAGTGATGTTTATGGATTTGGAGTGGTGCTGCTTGAATTGCTGAAAGGGATGCGGGCACTTGATGTAAACCGCCCTTCAGGGCAACAAAATCTGGTTGAGTGGATCAAGCCTTATCTATCTGATAAAACCAAGTTGAAAAGTGATATTATGGATGAGAAGATTGAGGGTCAGTATTCAACCAAAGCAGCACAGAAAGCAGCACAACTTACTCTGCAATGCCTTCAAAATGACCGTAATAAACGTCCTTCTATGAAAGATGTTCTTATCACGTTGGAAAGCATCCAAGCCATCAAGGTTAGTAGGAGGAAAAGAAACAAACATTGTTCTAAGCTTGCAACACTGTGA 1170 0.441 MGVCFASPARKQSPNSTSPQLGSAPGSGDLTVSLESVEGKHEVSEESGVVGSSSNGSGIVFPSVEMRRLKEFSFAELKAATKSFKSDALLGEGGFGKVYKGWLHEKTLTPTKAGSGIMVAIKKLKPESMQGLQEWQSEINFLGRVSHPNLVKLLGYCCDDEEFLLVYEFMPKGSLETHLFWSGNTVPLSWDTRLKIAIGAARGLTYLHTSEKQIIYRDFKASNILLDEEFNSKISDFGLAKLGPSVGDSHVTTRIIGTYGYAAPEYIATGHLYVKSDVYGFGVVLLELLKGMRALDVNRPSGQQNLVEWIKPYLSDKTKLKSDIMDEKIEGQYSTKAAQKAAQLTLQCLQNDRNKRPSMKDVLITLESIQAIKVSRRKRNKHCSKLATL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00771 389 Gene3D Phosphorylase Kinase; domain 1 60 169 - -
Phco4g00771 389 FunFam Serine/threonine-protein kinase PBS1 170 384 - -
Phco4g00771 389 MobiDBLite consensus disorder prediction 9 30 - -
Phco4g00771 389 ProSiteProfiles Protein kinase domain profile. 84 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00771 389 CDD STKc_IRAK 90 369 - -
Phco4g00771 389 ProSitePatterns Protein kinases ATP-binding region signature. 90 123 IPR017441 GO:0005524
Phco4g00771 389 FunFam Serine/threonine-protein kinase BIK1 52 169 - -
Phco4g00771 389 MobiDBLite consensus disorder prediction 1 54 - -
Phco4g00771 389 PANTHER OS01G0588500 PROTEIN-RELATED 43 370 - -
Phco4g00771 389 SUPERFAMILY Protein kinase-like (PK-like) 65 371 IPR011009 -
Phco4g00771 389 Gene3D Transferase(Phosphotransferase) domain 1 170 387 - -
Phco4g00771 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Phco4g00771 389 Pfam Protein tyrosine and serine/threonine kinase 87 363 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00771 Phco-Chr4 5937361 5941595 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco4g00771 PK_Tyr_Ser-Thr 2e-47 CL0016