Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00757 ATGTCGTGTTCGTCGTCGTCGGGGTCGGAGGAAGACGATGAGGGATTCGACTCTTACCGGAAAGGAGGTTACCATGCCGTCAGAGTCGCCGATCAGTTTGGCGGCGGCAGGTACATAGCTCAGAGGAAATTGGGTTGGGGTCAGTTCTCCACCGTCTGGCTTGCTTACGATACTAAAACTTCTTCATTTGTTGCTCTCAAGATCCAGAAAAGTGCGGCCCAGTTTGTTCAGGCTGCCCTTCATGAGATTGATATTCTTTCATCCATTGCTGACCATGACCCATCAAATTCAAAATTTGTAATTCAATTGATTGACAACTTTAAGCACACTGGTCCAAATGGGCAGCATCTTTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTTCGCTTGATCAAATATAACCGTTACAAAGGTCTTCCATTGAATAAAGTTAGAGAGATTTGCAAATGCATTTTAATCGGTTTGGACTACTTGCATACTGATCTTGGTATAATCCACTCTGACCTAAAACCTGAAAACATTCTTCTATGTTCAACCATTGATCCTGCCAAAGACCCTTTAAGATCTGGTCTCTCCCCAATTCTAGAGCGGCCTGAGGGAAACACAAATGGTGGTGTCACAAGTCTTGTTGAGAAAAGGTTGAAAAGGAGAGCAAGGTCGGCAGTTGCTAAGATATCCGGAAGAAGAGGGTCAATGGGAGGAAGTGGAGATATTGCAAAGAATGATAGAAATATTAATGGGATTGATGTGAGATGCAAGATAGTAGATTTTGGAAATGCGTGTTGGGCTGATAAGCAGTTTGCAGAAGAAATACAAACAAGACAGTACAGAGCACCTGAAGTTATACTGATATCTGGATATTCCTTCTCCGTTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAACTAGCCACTGGAGATATGTTGTTTACACCAAAGGGTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTATTGGTGGAGGTCAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGGATTCGAAGGCTAAAATTTTGTCCACTAGACAAATTGCTGACTGATAGATATAAATTTTCAGTTAATGATGCTCAAGAGTTTTCAGAATTTCTTCAACCACTCTTTGATTTTGCACCGGAGAAGCGACCAACTGCCCGACAGTGCCTGGAACATCCATGGCTAAACTGCATGGAGTCCCCTCCAAATAAAACTGCTGAGGAAAAAGTTGATGTTGGGATGAGCAACCTCGAAATCAGGGTGGGAAAGTGA 1326 0.4344 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVADQFGGGRYIAQRKLGWGQFSTVWLAYDTKTSSFVALKIQKSAAQFVQAALHEIDILSSIADHDPSNSKFVIQLIDNFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRYKGLPLNKVREICKCILIGLDYLHTDLGIIHSDLKPENILLCSTIDPAKDPLRSGLSPILERPEGNTNGGVTSLVEKRLKRRARSAVAKISGRRGSMGGSGDIAKNDRNINGIDVRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILISGYSFSVDMWSFACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIAIGGGQSKDFFDRHGDLKRIRRLKFCPLDKLLTDRYKFSVNDAQEFSEFLQPLFDFAPEKRPTARQCLEHPWLNCMESPPNKTAEEKVDVGMSNLEIRVGK 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00757 441 FunFam Serine/threonine-protein kinase SRPK 117 413 - -
Phco4g00757 441 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00757 441 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Phco4g00757 441 CDD STKc_SRPK 27 413 - -
Phco4g00757 441 SUPERFAMILY Protein kinase-like (PK-like) 34 419 IPR011009 -
Phco4g00757 441 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00757 441 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00757 441 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 205 - -
Phco4g00757 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Phco4g00757 441 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Phco4g00757 441 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00757 441 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Phco4g00757 441 FunFam Protein kinase superfamily protein 24 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00757 Phco-Chr4 5837171 5840799 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Phco4g00757 Pkinase 9.3e-22 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00757 4 5837171 5840799 Phco4g00757 4 5837171 5840799 ECH
Phco4g00757 4 5837171 5840799 Phco8g00323 8 3003185 3007076 PCT