Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00752 ATGAAAACTTGTTCTGTTTTAAGCTCTCCGTTTTCCCTTTTTCTTCTCCTTTGTCTCTTCTTCTCCTTCCTCACCTTCTCCACCTCACAATCCCAACTCTCCCTTCGCCCTTCTCCACCCTCAGTTAAACCGGCCACGGCACTCGTCGCCGCCCTTGATGGCACCGTGTATTTGGTGGAAAGTGATTCTGGAAGGGTCTTTTGGTCTTTTTCAACTGCATCTCCAATCTACTATTCCTATCATGCTCCCATCAATAACCCTAACCACAACTTCACCGCCTTCGTTGAATGTGGAGATGATTGGGAATTAATCGTCCACGACCCTCACTTGGGTCAAACGAGACTATCGAAATCGATTGAAGAGTATGTCGCCTCTACCCCTATCAAGACAAAGGATGGAGCATCGGTATTTGGTCACAAGAGAACCACTATGTATGTAGTTAATGCTAAAACTGGAGGGCTTTTTCGAAGCTACTCTGAACATGATCACGCTTCTAATGTGGTGTCGAGTTTTGATGACCGGTTGCATGTTACAAGTACGCAGGATAATTTGCTTGTTGATCCTGCACAGCTGAATCCACCTGAGTTCTTGCTTGAGATAACTAGGACGGATTATACTTTGCAATCCGTTGTTCCTGGTCCTGGGGTAGTTTTGTGGACTATGAAAGTGGCTGAATTTAAGGCTGCATTGGTTTGCCCACATACTTCTGGAAGGATTTCATTAGATGCAGAGGGTGGGTATGATTTGGACGGTGGCTTAGATTTTGCTATGCCCTATGCATGTTGGGACATGAAACTGAATGAAGTATACCGCCAACGTAAGAAATTTTTTATAGAACCTGCTGAGAGATTGTCTGAGGTTTATGAAGAGGTTGATATGCTTCCATTTCGTACTTCAGAGCTCATGCTTCCATCACAACCTGCTACTGATCAATTTTTCCTAGTCCAGGATGGAAATACGGTGCTATCTTTGCCTATGCCAAATTCTTTGCCTTCTTTGCAGCAAAAAAATGGCTTCTATGAGAGCAATGATAATGTACCTATGCTCCCTCGGTCTCGTATGGAGATCACTACAGAAGAAGTTGATCCAGGCAGGGTGAATAAATGGTCAAAAACATTACCTCTTGTATTATTTACCATCTTTCTTGGTTCTTTCATTATCTACCAGTCTCTTTTCTTTACAAATAAAGACCAGAACAGGGAGATAAATTCCAAAAGTCCACCTCCTAAGAAGAAGAAAGCCCGCAAGTCAATAAAGAACAACATCATTGCTGTCACACAGAATAAACAATCGTTATTGGTCCAGGAGGAGGACACATTCACACTTAATGAAACTAACTCCAGTACACAGGTGCAAGTTGATGGACGCAGGATCGGTAAACTATTTGTATCTAATAAAGAAATTGCTAAGGGAAGCAATGGTACTGTTGTCCTTGAGGGGACATATGAAGGTCGGACAGTTGCTGTCAAACGTCTTGTGCAAAGTCATCATGATGTAGCCCATAAAGAAATCCAAAATCTCATTGCATCTGACAGACATCCAAACATTGTCCGATGGTATGGGGTGGAATGCGATCATGATTTTGTTTACCTTGCTCTGGAACGCTGTACATGCAACTTGGACGATTTGATTCATTTGTACTCTGATATATCAGATAATCCAGCAGTTAGAACTTCTCAAATGCAGACAGAGAAGAATGTTATGCACTATCTTTGGAAAACAAATGGTTTTCCATCACCTCTGCTACTTAAACTGATGAGGGATGTAGTTTCTGGGCTTGTTCATTTGCATGAATTAGGGATAATCCATCGGGATTTGAAACCTCAAAATGTTTTGATAATAAAAGAAAGATCATTAGTTGCAAAGCTTTCTGACATGGGAATTAGCAAACGCCTTCTCGAAGATATGTCTTCTCTAGGTGAAAGTGTTACAGGCTGTGGCAGTTCAGGCTGGCAAGCACCGGAACAACTTGTTCAAGGGCGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGTGTCCTCTTTTTCTGCATGACTGCAGGAAGACATCCATTTGGAGAGCGGCTTGAGCGTGATGTCAATATTGTTAAAAATCAAAAAGATCTTTTCTTAGTGGAGTTTATTCCTGAAGCCGAGGATCTTATTTCTTGTTTGTTAAACCCTAATCCTGATCTTAGGCCAATGGCGATTGAAGTATTGCAACATCCTCTCTTTTGGAGCTCTGAGATGAGACTTTCATTTTTTCGTGATGTAAGTGATAGGGTGGAACTTGAAGATAGAGAATACGATTCTGATCTTTTGAAGGCATTAGAAAGCACTGCTCACCTGGCTTTAGGTGCAAAATGGGATGAGAAGCTAGATCCTGATTTTGTTACTAACATTGGTCGTTACCGGAGATATAAATTTGACAGTGTTCGGGACTTGTTGAGGGTCATGAGAAATAAGCTAAATCATTACAGGGAACTGCCTCAAGAAATCCAGGAACTGATAGGACCTCTTCCGGAAGGATTCAATGACTACTTTGCAAGTCGATTCCCAAGGCTCTTGATTGAAGTGTACAAAGTTATACACAGAAATTGCAAGAACGATGAATGTTTTCAAAGATATTTTAGATACATTAACTAG 2628 0.414 MKTCSVLSSPFSLFLLLCLFFSFLTFSTSQSQLSLRPSPPSVKPATALVAALDGTVYLVESDSGRVFWSFSTASPIYYSYHAPINNPNHNFTAFVECGDDWELIVHDPHLGQTRLSKSIEEYVASTPIKTKDGASVFGHKRTTMYVVNAKTGGLFRSYSEHDHASNVVSSFDDRLHVTSTQDNLLVDPAQLNPPEFLLEITRTDYTLQSVVPGPGVVLWTMKVAEFKAALVCPHTSGRISLDAEGGYDLDGGLDFAMPYACWDMKLNEVYRQRKKFFIEPAERLSEVYEEVDMLPFRTSELMLPSQPATDQFFLVQDGNTVLSLPMPNSLPSLQQKNGFYESNDNVPMLPRSRMEITTEEVDPGRVNKWSKTLPLVLFTIFLGSFIIYQSLFFTNKDQNREINSKSPPPKKKKARKSIKNNIIAVTQNKQSLLVQEEDTFTLNETNSSTQVQVDGRRIGKLFVSNKEIAKGSNGTVVLEGTYEGRTVAVKRLVQSHHDVAHKEIQNLIASDRHPNIVRWYGVECDHDFVYLALERCTCNLDDLIHLYSDISDNPAVRTSQMQTEKNVMHYLWKTNGFPSPLLLKLMRDVVSGLVHLHELGIIHRDLKPQNVLIIKERSLVAKLSDMGISKRLLEDMSSLGESVTGCGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKNQKDLFLVEFIPEAEDLISCLLNPNPDLRPMAIEVLQHPLFWSSEMRLSFFRDVSDRVELEDREYDSDLLKALESTAHLALGAKWDEKLDPDFVTNIGRYRRYKFDSVRDLLRVMRNKLNHYRELPQEIQELIGPLPEGFNDYFASRFPRLLIEVYKVIHRNCKNDECFQRYFRYIN 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00752 875 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 563 741 - -
Phco4g00752 875 SMART serkin_6 462 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00752 875 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 38 201 IPR011047 -
Phco4g00752 875 Gene3D - 25 225 IPR015943 GO:0005515
Phco4g00752 875 Pfam Protein kinase domain 464 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00752 875 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 743 875 - -
Phco4g00752 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
Phco4g00752 875 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 454 534 - -
Phco4g00752 875 SMART PGNneu 804 858 - -
Phco4g00752 875 SUPERFAMILY Protein kinase-like (PK-like) 454 752 IPR011009 -
Phco4g00752 875 Pfam Ribonuclease 2-5A 745 871 IPR010513 GO:0004540|GO:0006397
Phco4g00752 875 Gene3D KEN domain 742 874 IPR038357 -
Phco4g00752 875 Gene3D Transferase(Phosphotransferase) domain 1 560 741 - -
Phco4g00752 875 PANTHER IRE1-RELATED 114 872 IPR045133 GO:0004521|GO:0004674|GO:0030968
Phco4g00752 875 ProSiteProfiles Protein kinase domain profile. 462 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00752 875 CDD RNase_Ire1 743 871 - -
Phco4g00752 875 Gene3D Phosphorylase Kinase; domain 1 447 534 - -
Phco4g00752 875 ProSiteProfiles KEN domain profile. 742 873 IPR010513 GO:0004540|GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00752 Phco-Chr4 5804803 5811051 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Phco4g00752 Pkinase 8.5e-40 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00752 4 5804803 5811051 Phco4g00752 4 5804803 5811051 ECH
Phco4g00752 4 5804803 5811051 Phco8g00318 8 2961119 2968361 PCT