LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco4g00736	ATGAGTGATGCTAAAGAACACGAAGAGGCTGGCCAGGGCAAGCCCTCGGTCGTGGAAGAGAACAAGCTGTTGGTTGATACAAAGGATCGAGTTCAGCCTGAAGCTGTCTCTGCTCCTGTTCCAGTAGAGGAAACGTCAAACCTTGCTGAAAATGGGTCAAATCATGTTGAGAGTGGATCAAATCTTGCTGAAAATAAGAAGGAAGAGCCACTTGCTGAGCATAAAAATGTGCAACTTGAGGTTGTTTCAGAAGCAATTCCACAAGAGGATGTTCAAAATACTCTTCACTCTGTCCCAGCAGAGGCTCATACTCAGGTTTTGAATACGACTGAGTGTGAAGAAGCTTCTAAAGGGAAGGGGGAAGCTGAAGAATTTCCCATGATTAATAAAAAGGTTGAGGATAGTGATGATATTTGTCAGAATAGTATTGATGATGTTGAAATGGCTGTGGAAGTGAAGCCTGAAGGCTGTGGAGTGGTTGACAGTAAAACTTGCGACAATGGTGACCCAATGCCTGCAAGTCATAATGAACCTGCTATATCACAACCTGCTCCTACTGATACAAACACTGAACTTGTGAATGTATTAGAAGTTGAGAATAAGGCTGATGAAAAGCAAGCTACCGATCCTGCTGATAATGGGAATTCAAACTCGAAGCACTTGTTTTTCTTGGATGCTGACCATTCCTATGATGGTAATGAGTCAGGAACCGAGGAGGAGCAGTCAGCATTTATGAAGGAGCTTGAAAACTTCTTTAGAGAGAGGAGCTTGGAATTCAAACATCCTAAGTTTTATGGAGAAGGACTAAATTGCCTCAAGTTGTGGAGAGCTGTAACGAGATTGGGTGGCTATGATAAGGTGACTTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACCACTGTCTCGTGGACCTTCCGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAAATAAAAGGTGGTGAGCTAAATGTGCCGATTTCTTCTCTCCCAGAGCCTATAAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCGATGCAGGGTTGGCACTCACAACGTCTCCTAGGGAATGGTGAAGTTAGTGACCCCATTATTAAGGATAGGAATTCCATGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTGCACAAACGTAAAAAACCATCTTCACCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCTTCTAAACCACAATTGGACACTACTGTGATTGATATAGGACCTCCTGCTGACTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTTGAAGTATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTTCGTGTGCAGTCAGACCCTGCAGGACGCCTAGTCATAAGTGGTGAGCCTGAGCATCCCAACAATCCTTGGGGTGTAACACCTTTCAAAAAGGTCGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCGGCGGTGGTGACGCTGCATGGGCAGTTGTTTGTTCGTGTACCATTTGAACAGTCAGAATAG	1605	0.4417	MSDAKEHEEAGQGKPSVVEENKLLVDTKDRVQPEAVSAPVPVEETSNLAENGSNHVESGSNLAENKKEEPLAEHKNVQLEVVSEAIPQEDVQNTLHSVPAEAHTQVLNTTECEEASKGKGEAEEFPMINKKVEDSDDICQNSIDDVEMAVEVKPEGCGVVDSKTCDNGDPMPASHNEPAISQPAPTDTNTELVNVLEVENKADEKQATDPADNGNSNSKHLFFLDADHSYDGNESGTEEEQSAFMKELENFFRERSLEFKHPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPISSLPEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSMSVQKREKQLKSINLHKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE	534

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco4g00736	534	Gene3D	-	238	335	IPR036431	GO:0003677
	Phco4g00736	534	PANTHER	AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT	62	533	IPR045147	GO:0006357
	Phco4g00736	534	FunFam	AT-rich interactive domain-containing protein 3	426	534	-	-
	Phco4g00736	534	MobiDBLite	consensus disorder prediction	1	29	-	-
	Phco4g00736	534	MobiDBLite	consensus disorder prediction	1	71	-	-
	Phco4g00736	534	FunFam	AT-rich interactive domain-containing protein 3	238	337	-	-
	Phco4g00736	534	ProSiteProfiles	Small heat shock protein (sHSP) domain profile.	434	534	IPR002068	-
	Phco4g00736	534	SUPERFAMILY	ARID-like	233	339	IPR036431	GO:0003677
	Phco4g00736	534	Pfam	ARID/BRIGHT DNA binding domain	241	325	IPR001606	GO:0003677
	Phco4g00736	534	SMART	bright_3	239	330	IPR001606	GO:0003677
	Phco4g00736	534	ProSiteProfiles	ARID domain profile.	238	329	IPR001606	GO:0003677
	Phco4g00736	534	SUPERFAMILY	HSP20-like chaperones	443	530	IPR008978	-
	Phco4g00736	534	CDD	ARID	240	325	-	-
	Phco4g00736	534	SMART	ARID_2	235	325	-	-
	Phco4g00736	534	MobiDBLite	consensus disorder prediction	44	60	-	-
	Phco4g00736	534	Gene3D	-	436	534	IPR008978	-
	Phco4g00736	534	CDD	ACD_sHsps-like	449	529	-	-
	Phco4g00736	534	Pfam	Hsp20/alpha crystallin family	451	533	IPR002068	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco4g00736	Phco-Chr4	5628452	5634048	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Phco4g00736		HSP20	1.5e-05	CL0190

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco4g00736	4	5628452	5634048	Phco4g00736	4	5628452	5634048	ECH
	Phco4g00736	4	5628452	5634048	Phco8g00305	8	2792060	2800640	PCT