Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00728 ATGATTCCCCTCCAATGCAACAAAATGGCAGCTTACTCCGCCGCCATCGCCGTCATCACCACCATCCTCTTCCTCTTCCCGGCGCCGACTTCCCAAGCCCAGATTCTCAACACACAACCCCACGTCTTTGGTCCCTTCAACCAATCCTACTTCAACACGTTCGCCGTGCTGCCCAGCGCCGCCATCAACCTGGAAGCTCTCCAAGTAACACCAGACAGCAGCGGCAACGTCTCCCTGGCCAACCGCTCCGGCAGAATCTTCTTCGACACCCCCTTCACTCTCTGGGACGACCAAGATAGCCTCGACGGAAAACTCGTCTCCTTCAACACTTCCTTTCTGATAAACGTGTACCGTCCCAAAAACGAAACACCCGGCGAGGGCATCGCCTTCTTCATCGCGCCTTCTCCCTCTCCCGCTCCTCTCAACAGCCACGGCGAGTTTCTCGGCCTCACCAACGCCTCCACCGACGGCAACCGCACCAACCAAATCGTCGCCGTCGAACTTGACACCGTGAAGCAGGACTTCGACCCCGACGACAACCACATCGGGCTGGACGTTAACGGCGTGAGGTCCAACGTCACTGTGTCTCTCACTCCCTTGGGGTTCGAGATCGCGCCCAACGTCACGCGCCTCCACGTGCTGTGGGTGGAGTATGACGGCGACCGGAAGGTCATCGACGTGTACATCGCGGTGCAGCCGGATAAGGACGCGCCCATAGTGGCAAAACCAGCTAAGCCGGTTTTGAGTTCAACTCTTGATCTGAAACAAGTGGTGAACAGGGTTTCTTATTTTGGGTTCTCTGCTTCGACCGGTGACAACGTTGAACTAAACTGCGTGCTGAGGTGGAACATTTCCATTGAAGTTTTTCCCGAAAAAAAGGGTGTCGGAAATGCGTTGAAGATTGGATTGGGTGTTGGAGTGCCTCTGGTGGTTCTTCTTGTAGCGGGTGTTGTAGGGTGGGTTTATTGGTTGAGGAGAAAGCAGAGAGAAAGTGAGACTCAGATTTTGGGAACTCTCAAGAGTTTACCGGGAACTCCCAGAGAGTTCAGGTTTCAAGAATTGAAGAAAGCGACTAATAATTTCGATGAGAAGCATAAACTTGGACAAGGTGGATACGGCGTCGTTTTTAGAGGAACACTTCCGAAGGAGAAGTTGGAAGTAGCCGTTAAAATGTTCTCCAGAGATAAGATGAAAAGCACGGATGATTTCTTGGCTGAACTCACCATCATCAATCGCCTTCGTCACAAAAACCTTGTTCGTTTACTCGGGTGGTGTCACAGAAACGGGGTGTTGCTGTTAGTGTACGATTACATGCCCAATGGAAGTTTGGACAACCACATTTTCTGTGAGGAAGGGAGAAGCACTAGCCCACTAAGTTGGCCTTTAAGGTACAAGATCATAGCAGGGGTGGCTTCTGCATTGAACTACCTACACAACGAGTATGATCAGAAAGTGGTCCACAGAGACCTTAAGGCCAGCAACATCATGCTGGACTCAGACTTCAATGCTCGTTTAGGTGACTTCGGTCTGGCTCGTGCATTGGAGAATGATAAAACATCTTATGCAGAGTTGGAAGGAGTGCATGGCACCATGGGGTACATTGCACCTGAGTGCTTCCACACGGGGAGGGCCACAAGGGAATCCGATGTTTATGGGTTTGGAGCTGTGCTCCTTGAGGTGGTGTGTGGTCAAAGACCATGGACCAAGAATGAGGGGTATGAGTGCTTGGTGGATTGGGTATGGTTCCTGCATCGTGAGCAAAGGATACTTGATGCAGTGGATCCAAGACTTGGCAATGACTGTGTGGCTGAAGAGGCAGAGAGAGCTCTGAAATTAGGACTAGCCTGCTCTCACCCCATTGCCAGTGAGAGACCAAAGATGCAAACAATTGTGCAGATCATATCTGGTTCAGTGCCTGTGCCTCATGTTCCACCTTTCAAGCCAGCTTTTGTGTGGCCAGCTATGGACCTGTCAAGCCTTGCAAGTGAGCTCACACAAACCACAACAACAGAGTACACACCCATGAACAGTACCACACATTCTACTCGTGTTGATTTCTCAGATAGTGGTTCTCTCGTCTAA 2082 0.5115 MIPLQCNKMAAYSAAIAVITTILFLFPAPTSQAQILNTQPHVFGPFNQSYFNTFAVLPSAAINLEALQVTPDSSGNVSLANRSGRIFFDTPFTLWDDQDSLDGKLVSFNTSFLINVYRPKNETPGEGIAFFIAPSPSPAPLNSHGEFLGLTNASTDGNRTNQIVAVELDTVKQDFDPDDNHIGLDVNGVRSNVTVSLTPLGFEIAPNVTRLHVLWVEYDGDRKVIDVYIAVQPDKDAPIVAKPAKPVLSSTLDLKQVVNRVSYFGFSASTGDNVELNCVLRWNISIEVFPEKKGVGNALKIGLGVGVPLVVLLVAGVVGWVYWLRRKQRESETQILGTLKSLPGTPREFRFQELKKATNNFDEKHKLGQGGYGVVFRGTLPKEKLEVAVKMFSRDKMKSTDDFLAELTIINRLRHKNLVRLLGWCHRNGVLLLVYDYMPNGSLDNHIFCEEGRSTSPLSWPLRYKIIAGVASALNYLHNEYDQKVVHRDLKASNIMLDSDFNARLGDFGLARALENDKTSYAELEGVHGTMGYIAPECFHTGRATRESDVYGFGAVLLEVVCGQRPWTKNEGYECLVDWVWFLHREQRILDAVDPRLGNDCVAEEAERALKLGLACSHPIASERPKMQTIVQIISGSVPVPHVPPFKPAFVWPAMDLSSLASELTQTTTTEYTPMNSTTHSTRVDFSDSGSLV 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00728 693 SUPERFAMILY Concanavalin A-like lectins/glucanases 44 289 IPR013320 -
Phco4g00728 693 ProSitePatterns Protein kinases ATP-binding region signature. 367 390 IPR017441 GO:0005524
Phco4g00728 693 Gene3D Transferase(Phosphotransferase) domain 1 438 638 - -
Phco4g00728 693 SUPERFAMILY Protein kinase-like (PK-like) 343 663 IPR011009 -
Phco4g00728 693 MobiDBLite consensus disorder prediction 672 693 - -
Phco4g00728 693 Gene3D - 41 297 - -
Phco4g00728 693 FunFam Putative L-type lectin-domain containing receptor kinase S.5 37 298 - -
Phco4g00728 693 Gene3D Phosphorylase Kinase; domain 1 346 437 - -
Phco4g00728 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Phco4g00728 693 CDD STKc_IRAK 367 634 - -
Phco4g00728 693 SMART serkin_6 361 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00728 693 PANTHER - 71 644 - -
Phco4g00728 693 FunFam probable L-type lectin-domain containing receptor kinase S.5 438 639 - -
Phco4g00728 693 ProSiteProfiles Protein kinase domain profile. 361 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00728 693 Pfam Protein kinase domain 362 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00728 693 ProSitePatterns Legume lectins beta-chain signature. 164 170 IPR019825 -
Phco4g00728 693 CDD lectin_legume_LecRK_Arcelin_ConA 66 283 IPR001220 GO:0030246
Phco4g00728 693 FunFam probable L-type lectin-domain containing receptor kinase S.5 346 437 - -
Phco4g00728 693 Pfam Legume lectin domain 53 287 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00728 Phco-Chr4 5570631 5573538 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Phco4g00728 Pkinase 8.7e-49 CL0016