Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00688 ATGAACACTTTTTTTCTCCTGTTTCCTTCCTTTTGTTCTGTAGCATGTCTTCCCATGCTTGTCCTCTTTATTGTCAACTCTCTCTTGTGTGTCCCAAACACAGCTGCCTCTATATTAGGAAACCAGACCGACCATTTGGTGTTGCTCAAATTTAAGGATTCAATATCAAATGATCCTTATAAAATCATTGCATCTTGGAATAGTTCCATCCATTTTTGCAAGTGGCCTGGAGTTACGTGCAATTCCACGAATCAAAGAGTTATAGAGTTAAACCTAGAAGGAAAACAGTTGCAAGGTTCCATACCACCCCATATAGGCAATCTCTCTTTCCTAACCAGGCTTAACCTTGGAAACAACAGCTTTTATGGAAAAATTCCACAAGAACTGGGTCGGTTATTACAGTTACAAAACTTATCGCTCACCAATAACTCTTTGAATGGAGAAATACCTACGAACTTGACAAGATGTTCAAACCTTAGAGAGTTACACTTGTTTGGTAACAATTTGATTGGTAAAATACCAATGGAAATTGGCTACCTGCAAAGGCTTCAAGAAATGACCTTGGCAGTAAACAATCTAACAGGAGTAATCCCATCTTCCATAGGGAATCTTTCATCTCTCGTTTCTCTCTCAATCGGTGTCAATTACTTCGAGGGAAATATTCCACAAGAAATTTGTCTCCTAGAAAACTTGTCATTGATGTCATTGCATGTCAACAAGCTGATAGGTACATTTCCTTCTTGTCTTTTCAATATGTCCTCTCTTACCATTATCTCAGCTGCAGACAATCAATTTAATGGCTCCCTTCCACCAAACATGTTCCACACCCTCCCTAATCTCCGAGAATTCCTTGTTGGTGGGAATCATATCTCAAGTTCAATCCCAACTTCCATTGCAAATGCATCTGTCCTCCAAACCCTTGATGTTGGTACAAATCATTTAGCGGGCCAAGTTCCTAGTCTAGGAAATCTGAAAAAGCTTTGGTTCCTTAGTCTGTACAGCAACAACTTAGGTGACAATACGACAAAGGACTTGGAGTTTTTAAAATCCTTAGCCAATTGTAGCAAGTTGGAAGTGGTTTCTATTTCCTATAATAATTTTGGAGGTAGTTTGCCAAATTTTATGGGAAATTTATCCACCAAGCTTAGTCAATTATATCTTGGGGGTAATCACATATCAGGAAAAATTCCTCCAGAATTAGGCAATCTAGTTAACTTAACTATCTTGACAATGGAAATTAACCACTTTGAAGGGATTATTCCAGCCACTTTTGGGAAGTTCCAGAAGCTACAAAAGTTGGAGTTGAGTAGAAACAAGTTGACAGGAGACATTCCAGATTTTATAGGCAACCTCACTCAGTTGTATTATTTGGGCATGGCAGAAAATATGTTAGAAGGAAAGATTCCTCCAAGTATAGGAAACTGTAAAAATTTACAATACCTTAACCTTTGGAAAAACAACCTTGGAGGAAGCATACCCTTAGAGGTTTTTAGTCTTTTCTCTTTAACAAACTTACTGGACTTGTCACAAAATTCACTGAGTGGCAGGCTTCCTGATGAAGTTGGCCGCTTAAAAAATATCGGGAAGATGAGTGTGGCTGAAAATAATTTGTCTGGTGAAATTCCTGAAACCATTGGAGACTGCATAAGCTTGGAGTACCTTTGTCTGCAAGGAAATTCCTTTCATGGAGCCATACCTTCCTCTTTGGCTTCACTCAAAGGTCTTCGAGTATTAGACATGTCACGAAATCTTCTGACTGGATCAATTCCTAAGGATCTACAAAATTTTTCTTTCTTAGAATACTTCAATGTATCTTTTAACATGTTGGAGGGTGAAGTACCACTGGAAGGTGTCTTTCGAAATGCAAGTGAGTTATCCGTGGTTGGGAACAATAAGCTGTGTGGGGGTGTTTCAGAGTTGCATCTAGCACCGTGTCCTGTCAAAGGTAAGAAACCTGAAAAACACTTGAGTTTTGTTTGGATCGCAGTGATGATAGTTAGTGCGGTTTTTTTTCTTCTCCTTCTGCCATTTTTTATATCTATATACCGGGTGAGGATAAGAAACCACAAAAAATCATCGTCTGATTTGCCAACAATTGACCAAATGCACAAGGTTTCATACCAAAACCTACATCAAGGAACCGATGGGTTTTCAGTAAAAAATTTGATAGGATCTGGAAATTTTGGATCCGTCTACAAAGGGACTATTGAGATAGAAGGAGACAAAAATGTTGTTGCCATAAAGGTTGTAAAACTTCAACAGAAGGGAGCTTCAAAGAGTTTCATTGCTGAATGTAATGCCTTGAAAAGTATTAGGCATCGAAACTTGGTCAAAACTTTAACGTGTTGTTCTAGCATAGATCACAGAGGCCAAGAATTCAAAGCTCTTGTTTTTGAGTACATGACAAATGGAAGCCTAGAAAGATGGTTGCATCCAGAAATAGAAATTGCAAAGCAGCCTGCTAGATCATTAAACCTTGACCAAAGATTAAATATTATCATTGATGTTGCTTCTGCTTTTCACTATCTTCACTACGAATGTGAGCAACCCATTATTCACTGTGATTTGAAGCCAAATAATGTTCTTCTTGATGATTGCTTGGTAGCTCATGTAAGCGACTTTGGTTTAGCTAGAAGACTCACAACTATTGCAGTTTCTCCAAAACAAACTAGCACTGTTGAAATAAAGGGCACAATTGGTTATGCTCCTCCAGAATATGGAATGGGATCAAAGGTGTCTATAGAAGGCGACGTGTACAGCTTTGGAATTCTTGTTTTGGAAATGTTAACTGGGAGAAGACCAATAGATGAAATGTTTGAAGAGGGTCTTAATCTCCATAACTACGTCAAAATTTCAATTCCAAACCACCTTCCCCAGATTGTGGACCCGACTATTCTTCCAAAGGGATTAAAGGTGGCTGCTAATAACCAAAATCTTCCCCCAATGCATCCAATAGTAGAGAAATGCTTACTATCACTTTTTAGGATTGCACTTGCTTGTTCAACGGAGTCGCCAAAAGAAAGAATGAGTATGGTTGATGTAATTAGGGAGCTCCATTTGATCAAAAGTTCCTTTTCATCATGA 3084 0.3849 MNTFFLLFPSFCSVACLPMLVLFIVNSLLCVPNTAASILGNQTDHLVLLKFKDSISNDPYKIIASWNSSIHFCKWPGVTCNSTNQRVIELNLEGKQLQGSIPPHIGNLSFLTRLNLGNNSFYGKIPQELGRLLQLQNLSLTNNSLNGEIPTNLTRCSNLRELHLFGNNLIGKIPMEIGYLQRLQEMTLAVNNLTGVIPSSIGNLSSLVSLSIGVNYFEGNIPQEICLLENLSLMSLHVNKLIGTFPSCLFNMSSLTIISAADNQFNGSLPPNMFHTLPNLREFLVGGNHISSSIPTSIANASVLQTLDVGTNHLAGQVPSLGNLKKLWFLSLYSNNLGDNTTKDLEFLKSLANCSKLEVVSISYNNFGGSLPNFMGNLSTKLSQLYLGGNHISGKIPPELGNLVNLTILTMEINHFEGIIPATFGKFQKLQKLELSRNKLTGDIPDFIGNLTQLYYLGMAENMLEGKIPPSIGNCKNLQYLNLWKNNLGGSIPLEVFSLFSLTNLLDLSQNSLSGRLPDEVGRLKNIGKMSVAENNLSGEIPETIGDCISLEYLCLQGNSFHGAIPSSLASLKGLRVLDMSRNLLTGSIPKDLQNFSFLEYFNVSFNMLEGEVPLEGVFRNASELSVVGNNKLCGGVSELHLAPCPVKGKKPEKHLSFVWIAVMIVSAVFFLLLLPFFISIYRVRIRNHKKSSSDLPTIDQMHKVSYQNLHQGTDGFSVKNLIGSGNFGSVYKGTIEIEGDKNVVAIKVVKLQQKGASKSFIAECNALKSIRHRNLVKTLTCCSSIDHRGQEFKALVFEYMTNGSLERWLHPEIEIAKQPARSLNLDQRLNIIIDVASAFHYLHYECEQPIIHCDLKPNNVLLDDCLVAHVSDFGLARRLTTIAVSPKQTSTVEIKGTIGYAPPEYGMGSKVSIEGDVYSFGILVLEMLTGRRPIDEMFEEGLNLHNYVKISIPNHLPQIVDPTILPKGLKVAANNQNLPPMHPIVEKCLLSLFRIALACSTESPKERMSMVDVIRELHLIKSSFSS 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00688 1027 FunFam LRR receptor-like serine/threonine-protein kinase EFR 688 800 - -
Phco4g00688 1027 ProSiteProfiles Protein kinase domain profile. 717 1020 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00688 1027 SMART serkin_6 717 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00688 1027 SUPERFAMILY L domain-like 42 337 - -
Phco4g00688 1027 ProSitePatterns Protein kinases ATP-binding region signature. 723 748 IPR017441 GO:0005524
Phco4g00688 1027 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 801 1027 - -
Phco4g00688 1027 Gene3D Ribonuclease Inhibitor 342 652 IPR032675 -
Phco4g00688 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 851 863 IPR008271 GO:0004672|GO:0006468
Phco4g00688 1027 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Phco4g00688 1027 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Phco4g00688 1027 Pfam Leucine rich repeat 405 464 IPR001611 GO:0005515
Phco4g00688 1027 Gene3D Phosphorylase Kinase; domain 1 698 800 - -
Phco4g00688 1027 SUPERFAMILY Protein kinase-like (PK-like) 690 1020 IPR011009 -
Phco4g00688 1027 PANTHER LEUCINE RICH REPEAT KINASE 2 349 1023 - -
Phco4g00688 1027 FunFam LRR receptor-like serine/threonine-protein kinase EFR 348 651 - -
Phco4g00688 1027 Gene3D Transferase(Phosphotransferase) domain 1 801 1026 - -
Phco4g00688 1027 Gene3D Ribonuclease Inhibitor 166 275 IPR032675 -
Phco4g00688 1027 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 80 347 - -
Phco4g00688 1027 Gene3D Ribonuclease Inhibitor 276 341 IPR032675 -
Phco4g00688 1027 SMART LRR_typ_2 403 426 IPR003591 -
Phco4g00688 1027 SMART LRR_typ_2 132 156 IPR003591 -
Phco4g00688 1027 SMART LRR_typ_2 277 301 IPR003591 -
Phco4g00688 1027 SMART LRR_typ_2 572 595 IPR003591 -
Phco4g00688 1027 SMART LRR_typ_2 427 451 IPR003591 -
Phco4g00688 1027 SMART LRR_typ_2 499 524 IPR003591 -
Phco4g00688 1027 SMART LRR_typ_2 252 276 IPR003591 -
Phco4g00688 1027 SMART LRR_typ_2 180 203 IPR003591 -
Phco4g00688 1027 SUPERFAMILY L domain-like 380 635 - -
Phco4g00688 1027 Gene3D Ribonuclease Inhibitor 44 157 IPR032675 -
Phco4g00688 1027 Pfam Protein tyrosine and serine/threonine kinase 719 941 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00688 Phco-Chr4 5202681 5205854 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Phco4g00688 PK_Tyr_Ser-Thr 6.5e-41 CL0016