Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00686 ATGAAGAGCATAAACGACGACGGTTCAACGCAAGATCTCGACCCTCAGAGCGACCACAGCTCCGATTACTTAGCTCACCCTAACTCAAACCCACAGCCTCACCCTCACACGCGCCGTCCGCGGGGTTTCGCGGCGGCGGCGTCGGCCACCACCAATTCCGTCGCCAAGGGAAAGAAGGAGAGAGAGAAGGAGAAGGAGCGCACCAAGCTCCGCGAGCGACACCGCCGAGCCATCACAAGCCGCATGCTCGCAGGCCTCCGCCAGTACGGCAATTTCCCCCTGCCGGCGCGTGCCGACATGAACGACGTACTAGCCGCGCTAGCGCGTGAGGCTGGTTGGGTTGTTGACGCCGATGGCACCACCTACCGCCAGTGTCCCCCTCCCTCTAACATGGGATCCTTTGCGGCTAAATCAGTTGAAAGTCAACTCTCTGGTGGTTCTTTGAGGAATTGTTCTGTTAAGGAAACGATTGAGAATCAGACATCTGTGCTTAGGATCGATGAATGCTTGTCGCCTGCATCCATTGATTCTGTTGTAATTGCAGAAAGGGACTCAAGGAACGAGAAATATACAAATGCTAGCCCCATCAATACTGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCATGAAAATGATTTTACTGGCACACCATATGTTCCTGTTTATGTAAAGCTTCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATTAGGGAGGAGCTAATGCATATGAAGTCTTTAAATGTAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCTCACAGAAATATGTGTGGTCTGGCTATAGGGAGCTTTTTAACATAGTTAGAAACTTCAAACTGAAGTTACAGGTCGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTAATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGAAAACCAGGATATATTCTTCACAGATCGTGAAGGACGGAGGAATACTGAATGCCTTTCTTGGGGGATTGACAAAGAACGAGTTCTCAAAGGCAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTATGCTGTTGAAGTTGGACTTGGAGCATCCGGAGAGCTGAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAGTATCTGCAACATAGTCTGCGGAAAGCAGCCAAATTACGTGGTCACTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACATTACAATTCTATGCCGCATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAATTACTATGGACGATTCTTCTTACATTGGTACTCCCAGACATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAACCCTTGCTTTCGAGGAGACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTACAAGACTCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAACCCAACAAATCAGGATGGGTACTATCCTGTGTTTGAGGTTCTAAGAAAACATGGTGTCACCTTGAAATTTGTCTGCTTAGGGTTTCATCTTTCCAGCCAGGAAGCTAACGAATCATTGATTGATCCAGAGGGTCTGAGTTGGCAGGTGTTAAACTCAGCTTGGGATCGTGGGTTGATGGCTGGTGGAGAGAATGCTCTCCTTTGCTATGATAGAGAAGGGTACAAGAGATTGGTTGACATGGCAAAGCCGAGAAATGATCCTGATCATCGACATTTTTCATTCTTTGTTTATCAGCAACCATCTTTACTGCAGGCTAATGTTTGCTTGTCCGAATTGGATTTCTTCGTCAAATGCATGCATGGTGAAATGACGGATCCGTAA 1974 0.461 MKSINDDGSTQDLDPQSDHSSDYLAHPNSNPQPHPHTRRPRGFAAAASATTNSVAKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSNMGSFAAKSVESQLSGGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERDSRNEKYTNASPINTVDCLEADQLMQDIHSGVHENDFTGTPYVPVYVKLPAGIINKFCQLIDPEGIREELMHMKSLNVDGVVVDCWWGIVEGWSSQKYVWSGYRELFNIVRNFKLKLQVVMAFHECGGNDSSDALISLPQWVLDIGKENQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLIYAVEVGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRKAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYYPVFEVLRKHGVTLKFVCLGFHLSSQEANESLIDPEGLSWQVLNSAWDRGLMAGGENALLCYDREGYKRLVDMAKPRNDPDHRHFSFFVYQQPSLLQANVCLSELDFFVKCMHGEMTDP 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00686 657 Pfam Glycosyl hydrolase family 14 244 619 IPR001554 GO:0000272|GO:0016161
Phco4g00686 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 469 488 IPR001554 GO:0000272|GO:0016161
Phco4g00686 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 538 561 IPR001554 GO:0000272|GO:0016161
Phco4g00686 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 260 274 IPR001554 GO:0000272|GO:0016161
Phco4g00686 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 576 598 IPR001554 GO:0000272|GO:0016161
Phco4g00686 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 281 299 IPR001554 GO:0000272|GO:0016161
Phco4g00686 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 303 324 IPR001554 GO:0000272|GO:0016161
Phco4g00686 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 396 418 IPR001554 GO:0000272|GO:0016161
Phco4g00686 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 503 519 IPR001554 GO:0000272|GO:0016161
Phco4g00686 657 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 520 531 IPR001554 GO:0000272|GO:0016161
Phco4g00686 657 SUPERFAMILY (Trans)glycosidases 220 654 IPR017853 -
Phco4g00686 657 MobiDBLite consensus disorder prediction 1 32 - -
Phco4g00686 657 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 159 653 IPR001554 GO:0000272|GO:0016161
Phco4g00686 657 Gene3D Glycosidases 216 656 - -
Phco4g00686 657 Pfam BES1/BZR1 plant transcription factor, N-terminal 56 202 IPR008540 -
Phco4g00686 657 MobiDBLite consensus disorder prediction 55 72 - -
Phco4g00686 657 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00686 Phco-Chr4 5184764 5191809 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Phco4g00686 Glyco_hydro_14 4.9e-87 CL0058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00686 4 5184764 5191809 Phco4g00686 4 5184764 5191809 ECH