Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00681 ATGAAACCTTTTTCTCAAATGTTACTTGCACTTTGGTCTGTTTATGTCCATCTGTTTTCTCTCTTTGCATTGAACTCAGTGTGGATTAGCCAAAAAATGATTGCCTTTGCATCAGAAAATCAAACCGATCATTTGGCATTGCTCAAATTCAAGGAATCCATATCCACGGATCCATATGGAATCCTACTCTCTTGGAATAGTTCTACTCACTTTTGTAATTGGTATGGAATCACATGTAATCCCATGCTTCAAAGAGTTACTGGGTTGAATTTGGAAGGATACAAGTTGAAGGGATCCATATCTCCTCACATAGGCAACATCTCATTGATGAGAAACTTCAACCTTGGAGACAACAACTTCTACGGAAAAATCCCACAAGAATTGGGACGGTTGTCACAATTGTGCAACCTCTCTCTAGCAAATAACTCATTGGTAGGAGAAATTCCTACAAACCGGACAGGTTGCACTAATCTCAGAAGCTTACTCTTATATGGAAACAATCTAGTTGGCAAAATACCCTTCCAAATCAGCTGGCTTCGGAAGCTACAAAACTTGAGTGTTTTTAGCAACAAGTTAACTGGAGGAGTTCCGTCATTTGTAGGTAATCTTTCATCTCTAACTCATTTTTCTGTGTCTGACAATAAGTTAGAGGGAGATATTCCACAAGAAATCTGTAATCTCAAAAGCTTGACATTTCTATCATTGGGTCTCAACAAACTGACTGGAACATTTCCCTCTTGTCTCTATAATATGTCATCTCTTAGTCTAATCTCAGCTCCAGAAAATCAATTAAATGGATCTCTTTCGCCCAACATGTTCAACACCCTCCCCAATCTAGAACTACTTGCAATTGCTATGAATCAAATGTCAGGTCCAATCCCACCTTCCATCACTAATGCATCTGTTCTTCTAGTAATTGATATAAGTGAAAACCATTTCACTGGAAAAGTTCCAAGAAGTCTGGGGAAGCTACAAAATCTTCAATATCTGTCATTGTATAGAAACAATCTAGGTGACAATTCAACTAACGATTTGGAGTTTTTAAAATCATTCACAAACCGTAGTAAGTTGCAAAGGGTAGATGTAAGCTACAATAACTTTGGAGGTCATTTACCAAATTTCTTGGGCAATTTATCCATCCAACTCAGTCTACTACATCTTGGAGGTAACATGATATCAGGAGAAATCCCTGAGTCATTAGGAAATTTAATTGGCTTAGCTCTCTTGACGATGGAGCATAACCGCATTATTGGAACTATCCCAACTACTTTTGGAAAGTTTCTGAACATGCAAGTGTTAGACCTGAATGCAAACAAGCTGTCAGGAGAGATAGGACCCTTCATAGGAAACCTTAGTCAACTGTTTCATTTGGATATGGGAAAAAATATGCTAGAAGGAAATGTTCCTCCAAGTATAGGAAACTGTCAAAAGTTAGAACATCTAGACCTTTCACAAAACAACCTTACAGGAACCATACCCTTGGGGATTTTTAATCTTTCCTCTCTAACAACCATGTTGAATTTGTCAAAAAACTCATTGAGAGGTAATATACCAGAAGAAGTGGGCAGCCTAAAAAATCTCAATTGGCTAGATATATCTGAGAATCATCTGTCTAGTCACATTCCTGGAACTATAGGAGAATGCATAATGTTGCAATACCTCTATTTACAAGGAAATTCATTACAAGGATTCATACCATCCTCTTTGGCATCACTTAAAGGTCTTCAACGTTTAGACCTGTCATGGAATCATTTGTCTGGATCAATTCCAAATGTTATACAGAACATTTATTTCTTAGAATATCTCAATGTATCTTTCAACATGTTAGACGGTGAGGTTCCAACTGAAGGTGTCTTTCGAAATGCAAGTGGACTTGGGGTGACTGGAAATAGTAAGCTTTGTGGAGGTATTCCAGAAGTGCATCTACCACCATGCGCGGTTAAAGGTGTGAAACTTGCAAAACACCTCAAATTCAAGTTGTTAGCAGTGTTATTTAGTGTCATTGGTTTTCTTCTCACACTATCAATTATTATAACTATATCAATGAAGAGGAAAAGGAGTAAGAAGCCATCTTTGGATTCAACAACAATTAACCAACTAGCTAAAGTTTCGTACCAGAGTTTGCATAACGGAACTTGTGGGTTCTCAACTTCAAACTTGATATGTTCTGGAAATTTTAGCTCTGTGTACAAAGGAACTCTTGAATTAGAAGACAGAGTTGTTGCCATAAAGGTCCTAAACCTTCAAAGAAATGGAGCTCACAAGAGTTTCATTGCTGAATGCAATGCACTTAAAAATGTTAAACATCGAAATCTGGTTCCGATATTAACATGTTGTTCCAGTACGGATTACAAAGGTGAAGAATTTAAAGCTCTAGTTTTTAAGTATATGAGAAATGGAAGCTTAGAGCAATGGCTGCACCGAAGGACACTGGGGGCAGAACATCTGAGATCGTTGAACCTTGATGAAAGATTAAACATCATGATTGATGTTGCTTCTGCGATACATTATCTTCATCATGAATGTGAGAAATTGATTATTCATTGTGATTTAAAGCCAACCAATGTCCTCCTAGATGACGATATGGTTGCTCATGTGAGTGATTTTGGCATTGCAAGACTACTCTCAACTGTCAACTGTACCACTTCTGGGCAAACAAGTACTATTGGAATAAAAGGGACAGTTGGCTATGCTCCTCCAGAATATGGAATGGGTTCTGAGGTGTCTATGAATGGTGACATGTATAGTTTCGGGATTCTATTGTTGGAGATGCTTACCGGAAGAAAACCCACAGATGAAATCTTTGGAGATGGTCAAAATTTGTATAGCTTTGTGAAAAATTCATTTCCTGATAATCTTTTACAGATTTTGGATCCATCACTCGTACCAAACCATGGACAAGCAAGCACAGATGAAGAAAACAATCAGAATCTTACTTCAAGTGTTCAAAAGTGCTTAGTTTTACTCGTTCAGATTGGACTTGCGTGTTCTGTGGAGGCACCAGATCAAAGAATGAATATATTGGATGTCACTATAGAACTAAGCAAAATTAGAAGAACCTTTCTAATTGGTAAGATAAAACGACGAAGGGAACAGGCTTCTTTTCGTACTTCAGGCGTTTCAGTGAAATATGGTTCATTGTCATGTCCTGTATCACTTTCATGGTGCACCGGTAGAAAGATTGGTCCAAGGAGAGAAGAACGTGAACAAAGTCTCAATTGCGGTGTGGCCTCTGCCAAAACGAGGAAGTTCCTAAAAAACCACTTGGTTTGTTTGTGCAATGACATAAGAACGGGCACCCTAGACACCAAAATCACTGACCCCTCTGTGAGAGAAGCCGTGATGAAAGTACTGAAACCAAATCCCACGCTTGCGGATTTCATTGAAGCTGAATGCCTGAAGGGGTGGTGGAAAGGAAATGGTTACCAGGATATGGCCTAA 3441 0.3848 MKPFSQMLLALWSVYVHLFSLFALNSVWISQKMIAFASENQTDHLALLKFKESISTDPYGILLSWNSSTHFCNWYGITCNPMLQRVTGLNLEGYKLKGSISPHIGNISLMRNFNLGDNNFYGKIPQELGRLSQLCNLSLANNSLVGEIPTNRTGCTNLRSLLLYGNNLVGKIPFQISWLRKLQNLSVFSNKLTGGVPSFVGNLSSLTHFSVSDNKLEGDIPQEICNLKSLTFLSLGLNKLTGTFPSCLYNMSSLSLISAPENQLNGSLSPNMFNTLPNLELLAIAMNQMSGPIPPSITNASVLLVIDISENHFTGKVPRSLGKLQNLQYLSLYRNNLGDNSTNDLEFLKSFTNRSKLQRVDVSYNNFGGHLPNFLGNLSIQLSLLHLGGNMISGEIPESLGNLIGLALLTMEHNRIIGTIPTTFGKFLNMQVLDLNANKLSGEIGPFIGNLSQLFHLDMGKNMLEGNVPPSIGNCQKLEHLDLSQNNLTGTIPLGIFNLSSLTTMLNLSKNSLRGNIPEEVGSLKNLNWLDISENHLSSHIPGTIGECIMLQYLYLQGNSLQGFIPSSLASLKGLQRLDLSWNHLSGSIPNVIQNIYFLEYLNVSFNMLDGEVPTEGVFRNASGLGVTGNSKLCGGIPEVHLPPCAVKGVKLAKHLKFKLLAVLFSVIGFLLTLSIIITISMKRKRSKKPSLDSTTINQLAKVSYQSLHNGTCGFSTSNLICSGNFSSVYKGTLELEDRVVAIKVLNLQRNGAHKSFIAECNALKNVKHRNLVPILTCCSSTDYKGEEFKALVFKYMRNGSLEQWLHRRTLGAEHLRSLNLDERLNIMIDVASAIHYLHHECEKLIIHCDLKPTNVLLDDDMVAHVSDFGIARLLSTVNCTTSGQTSTIGIKGTVGYAPPEYGMGSEVSMNGDMYSFGILLLEMLTGRKPTDEIFGDGQNLYSFVKNSFPDNLLQILDPSLVPNHGQASTDEENNQNLTSSVQKCLVLLVQIGLACSVEAPDQRMNILDVTIELSKIRRTFLIGKIKRRREQASFRTSGVSVKYGSLSCPVSLSWCTGRKIGPRREEREQSLNCGVASAKTRKFLKNHLVCLCNDIRTGTLDTKITDPSVREAVMKVLKPNPTLADFIEAECLKGWWKGNGYQDMA 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00681 1146 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 42 153 - -
Phco4g00681 1146 Pfam Leucine rich repeat 551 609 IPR001611 GO:0005515
Phco4g00681 1146 Gene3D Transferase(Phosphotransferase) domain 1 797 1034 - -
Phco4g00681 1146 SUPERFAMILY L domain-like 381 635 - -
Phco4g00681 1146 FunFam LRR receptor-like serine/threonine-protein kinase EFR 685 796 - -
Phco4g00681 1146 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 277 1016 - -
Phco4g00681 1146 SMART LRR_typ_2 324 347 IPR003591 -
Phco4g00681 1146 SMART LRR_typ_2 572 595 IPR003591 -
Phco4g00681 1146 SMART LRR_typ_2 451 475 IPR003591 -
Phco4g00681 1146 SMART LRR_typ_2 203 227 IPR003591 -
Phco4g00681 1146 SMART LRR_typ_2 476 499 IPR003591 -
Phco4g00681 1146 SMART LRR_typ_2 524 548 IPR003591 -
Phco4g00681 1146 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Phco4g00681 1146 Pfam Protein kinase domain 717 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00681 1146 SUPERFAMILY Protein kinase-like (PK-like) 688 1011 IPR011009 -
Phco4g00681 1146 SMART LRR_sd22_2 203 229 - -
Phco4g00681 1146 SMART LRR_sd22_2 155 187 - -
Phco4g00681 1146 SMART LRR_sd22_2 324 347 - -
Phco4g00681 1146 SMART LRR_sd22_2 427 453 - -
Phco4g00681 1146 SMART LRR_sd22_2 475 510 - -
Phco4g00681 1146 SMART LRR_sd22_2 572 598 - -
Phco4g00681 1146 SMART serkin_6 715 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00681 1146 ProSiteProfiles Protein kinase domain profile. 715 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00681 1146 Gene3D Ribonuclease Inhibitor 456 504 IPR032675 -
Phco4g00681 1146 Gene3D Phosphorylase Kinase; domain 1 676 796 - -
Phco4g00681 1146 PRINTS Leucine-rich repeat signature 478 491 - -
Phco4g00681 1146 PRINTS Leucine-rich repeat signature 524 537 - -
Phco4g00681 1146 Gene3D Ribonuclease Inhibitor 206 455 IPR032675 -
Phco4g00681 1146 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 651 - -
Phco4g00681 1146 FunFam Piriformospora indica-insensitive protein 2 172 270 - -
Phco4g00681 1146 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 797 1027 - -
Phco4g00681 1146 Pfam Leucine Rich Repeat 477 496 IPR001611 GO:0005515
Phco4g00681 1146 Pfam GH3 auxin-responsive promoter 1082 1139 IPR004993 -
Phco4g00681 1146 Gene3D Ribonuclease Inhibitor 505 642 IPR032675 -
Phco4g00681 1146 Gene3D Ribonuclease Inhibitor 40 199 IPR032675 -
Phco4g00681 1146 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Phco4g00681 1146 SUPERFAMILY L domain-like 40 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00681 Phco-Chr4 5142759 5147967 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Phco4g00681 Pkinase 1.7e-38 CL0016