Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00678 ATGGAGTCAGAGCACACAGGAGGATGGGCATGTTGGTTTTGCTTCTCCTCCACCAAGAAGAGTGTTGCAAGGAATGGCAGAAGCAGTGGAGTTTTGAGTTCAGAAGCCGTTGAGAGGGGAAAGGATGATGAGATGCTATCTGACAGGAGCACGTTTTGTGTGAAAGAACAAGAAAAGAGGCTGAAGAAAGCATTGGAAGAGGAAGAAAAGGTTAGCAAGGAAGCAGAGAGGGTTGTCCAATGGGTGAAGCAGGAATCAGCAAGAATTGATGTTTCTGCATTCAAATCAGTTCTCACTCACCCCCAAAAACAATCAAATAAAATGAAGGAACCATCAAAGCCATGGAGACCGATCACTGCAAATTGCTGCTCCACAGAGGACCAAACCATTTTCAAGAACTTCAGCAGGTGCAAGCCTTCACGTTCTGACTTGTCAAAGAACATTGCTCCTTTGCCATCGTTCAGGAGACTCTCCTTCTCCGATCTCAGTCGTTCTTCGTCTGTGCGAATCAATGAGGATCTTGCACAGTCTTTTGGGTCGGACTTGTTTGATTTTCAGCTGAGTGAGTTGCGTGCCATAACGCAGAATTTCAGCAGCAACTTCTTGCTGGGAGAAGGAGGGTTTGGAACTGTGCATAAGGGCTACCTAGATGATCATCTCAGACTCGGATTGAAGGCACAACCTGTTGCTGTCAAGCTTCTTGACATCGAAGGCTTGCAAGGACACCGTGAATGGCTTGCAGAAGTGATTTTTCTTGGGCAGTTAAGACACCCCAATTTGGTTAAGTTGATTGGGTATTGTTGTGAAGATGAAGAACGATTACTTGTCTATGAATTCATGCCACGAGGAAGTTTGGAGAATCACCTCTTCAGAAGGCTAACATCACTTCCATGGGGACCAAGATTAAAAATTGCAATAGGTGCTGCTAAAGGACTTTCCTTCTTGCATGGAGCTGAGAAACCAGTCATTTATAGAGACTTCAAGACTTCCAATGTTTTGCTTGATTCAGAGTTCACAGCAAAATTGTCAGATTTTGGACTTGCAAAAATGGGGCCAGAGGGATCAAACACACATGTTTCAACCAGAGTCATGGGCACTTATGGATATGCAGCCCCAGAATACATCTCAACAGGGCATTTAACCACCAAAAGTGATGTCTACAGCTTTGGGGTAGTCCTGCTAGAACTGCTGACGGGAAGGAGAGCAACGGACAAAACAAGACCAAAAACTGAGCAAAACCTTGTGGATTGGTCAAAACCTTACTTGAGTAGCAGTAGGAGGTTGAGGTATATTATGGATCCAAGGCTTGCAGGTCAATATTCTGTGAAGGGTGCAAAGGAAATTGCTCGTTTGGCATTGCAATGCATAAGTTTGAATCCTAAAGACAGACCAAGAATGCCAATGATTGTTGAAACTCTTGAAGGCTTGCAACAGTACAAGGACATGGCTGTTACCAGTGGACACTGGCCAGTGTCACAAAAATCTACTAGGAGTAAAGTCTCCAACAATAAGATGAATGTGAACACTAGAGCCGGTGCAAACCACAAGCAATCATCACCAGTTCTGAGCAAAAAAACTTGA 1581 0.4434 MESEHTGGWACWFCFSSTKKSVARNGRSSGVLSSEAVERGKDDEMLSDRSTFCVKEQEKRLKKALEEEEKVSKEAERVVQWVKQESARIDVSAFKSVLTHPQKQSNKMKEPSKPWRPITANCCSTEDQTIFKNFSRCKPSRSDLSKNIAPLPSFRRLSFSDLSRSSSVRINEDLAQSFGSDLFDFQLSELRAITQNFSSNFLLGEGGFGTVHKGYLDDHLRLGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSLPWGPRLKIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSEFTAKLSDFGLAKMGPEGSNTHVSTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKTEQNLVDWSKPYLSSSRRLRYIMDPRLAGQYSVKGAKEIARLALQCISLNPKDRPRMPMIVETLEGLQQYKDMAVTSGHWPVSQKSTRSKVSNNKMNVNTRAGANHKQSSPVLSKKT 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00678 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 322 334 IPR008271 GO:0004672|GO:0006468
Phco4g00678 526 PANTHER OS01G0588500 PROTEIN-RELATED 114 477 - -
Phco4g00678 526 Pfam Protein tyrosine and serine/threonine kinase 203 473 IPR001245 GO:0004672|GO:0006468
Phco4g00678 526 ProSiteProfiles Protein kinase domain profile. 197 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00678 526 FunFam Serine/threonine-protein kinase PBS1 280 488 - -
Phco4g00678 526 Gene3D Transferase(Phosphotransferase) domain 1 280 495 - -
Phco4g00678 526 SUPERFAMILY Protein kinase-like (PK-like) 180 476 IPR011009 -
Phco4g00678 526 Gene3D Phosphorylase Kinase; domain 1 160 279 - -
Phco4g00678 526 CDD STKc_IRAK 203 476 - -
Phco4g00678 526 ProSitePatterns Protein kinases ATP-binding region signature. 203 232 IPR017441 GO:0005524
Phco4g00678 526 Coils Coil 54 85 - -
Phco4g00678 526 MobiDBLite consensus disorder prediction 487 526 - -
Phco4g00678 526 MobiDBLite consensus disorder prediction 488 526 - -
Phco4g00678 526 FunFam Serine/threonine-protein kinase BIK1 164 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00678 Phco-Chr4 5119353 5126832 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco4g00678 PK_Tyr_Ser-Thr 2.4e-46 CL0016