Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00669 ATGAAGTATTTTTCTCTCATGTTACTTGCATTTTGGTCTATATATGTCCACCTATTTGTTCTATTAACGTTAAACTCACCATGGATTATCCCAAAACTGGTTGCTTCTGCATCAGAAAATGAGACTGATCACATGGCACTGCTTGAATTTAGAAAATCCATACTCTCTGATCCACATGGAATCTTTCTCTCTTGGAATACTTGTACTCACTTTTGTAACTGGCATGGAATCACATGTAATCCAAAGCATCAAAGAGTTTTAGAGTTAAACTTGCAGGGATACAAGTTGAAGGGATCCATATCACCTTACATTGGCAACCTATCTTATATGAGAAGCATCAACCTCGGAGACAACAACTTCTATGGCGAAATCCCACAAGAATTGGGGCGATTGTCACAACTGCATAACCTTTCTGTAGGAAATAATTCATTGGTTGGAGAAATCGCTACAAACTTGACAGGTTGCACTAATCTCAAGTTTTTACATTTAGGTGGGAACAATTTTATTGACAAAATACCTATAGAAATTGGCTCACTTCGAAAGCTTCAACACTTGATCCTTTCAAATAACGAGTTTACTGGAGAAATCCCATTATTCATGGGAAATCTTTCATCTCTAACACTTCTTGCTGTAGCAGGAAACAACTTAGAGGGATCTATTCCACATGAAATATGTAGTCTCAAAAGCTTGACATGGATAGCATTTCACCTCAACAAACTGAGAGGCACATTTCCTACCTGTCTCTACAACATCTCATCTCTTAATATAATCTCAGCTACAAACAATCAACTTAATGGCTCTCTTCCCACCAACATGTTCCACACTCTCCCCAATCTTCACAAATTTCTAATTTCTAACAACCAAATCATAGGTTCAATCCCACCTTCCATCACAAATGCATCTTTCCTTTCAATTCTTGATGCTGATAATAACTATTTTACAGGACAAGTTCCTAGTCTGAGCAAGTTACAGGATCTTCGATATCTATCTTTTTCTGGGAACAATCTAGGTGACAATTCCACTGATGATTTAGAATTTTTAAAGTCATTGACAAACTGTAGTCAGTTGCAAATGATAGATATAGGCTTCAATAGTTTTGGAGGTCATTTGCCAAATTCTTTGGGCAATTTATCTATGCAACTCAATGAACTGTATCTGGGAGGCAATCATATAGTAGGAGAAATCCCTTCTGCGATAGGAAACCTCATTGGTTTAGTTCTCTTGTCCATGACCGGTAACTCCATAGATGGAACTATCCCTACAACTTTTGGTAAGCTTCAGAATATGCAAAAGTTGAGGTTAGGTAGAAACAAGTTATCAGGGGGAATAGGAGCCTTCATTGGGAACCTAAGTCAATTGTTTCACTTGGATGAGGGAAAAAATATGTTACAAGGAAAGATTCCTCCAAGTATAGGAAACTACCAAAGCATACCAGTAGAAGTGGGAAACCTTAAAAACCTTGGTTCCTTAGATATGTCTGAGAATAATCTGTCTTATCACATTCCTCCATCTATAGGAGAATGCATAGTGTTGGAGTACCTCAATTTGAAAGGGAATTCTTTAAATGGAATCATACCACCATCTTTGGCATCACTCAAAGGACTTCGAAGTTTAGACCTCTCACAAAACAGTTTGGGTGGATCAATTCCTAATGATCTGCAGAAAATTTCTGTCTTACAATACTTCAATGTGTCTCTTAACATGTTGGTCGGTGAGGTACCGAAGGGAGGTGTCTTTCAAAATGCTAGTGTGTTAGTGGTCACTGGAAACAAAAATCTCTGTGGAGGTATTTCAGAACTGCATCTACCTCCATGCCCTGTCGATGGTAAGAAACTTGCAAAACTTCATCCATTCATGTTGATAGCAACGATAGTTAGCGCAGTCGCTTTTCTTCTCATCATTTCAAGCTCTGGGAATTTTAGCTTTGTCTACAAAGGAATTCTTAGGCCAGAAGAGAAAGTTGTTGCCATAAAAGTCTTGAACCTTCAAAAAAGAGGATCTCAAAAGAGTTTCATCGCTGAATGCAATGCACTAAAAAATATTAAACATCGAAATGTAGTTCCAATTTTAACATGCTGTTCTGGAATAGACTACAAAGGTCAGGAATTTAAAGCTCTGATTTTTGAGTACATGAAAAATGGAAGCTTAGAGCAATGGTTGCATCAAATCGCATTAAGTGCAGAACATTCAAGAACATTAAACCTTGATCAAAGATTAAATATCATGATTGATGTTGCTTCTGCTTTACATTATCTTCATTATGAATGTGAGCAGTTGATCGTTCACTGTGATTTGAAGCCAAGCAATGTCCTTCTTGATGATGACATGATTGCTCATGTCAGTGATTTTGGCCTAGTAAGGCTTTTCTCAACAATCAATTGTACCAGTTCGCAGCACACAAGTACAATTGTCATAAAGGGTACAATCGGCTATGTTCCTCCAGAGTATGGAATGGGCTCTGAGGTGTCTACAGCTGGTGACATGTACAGTTTTGGGATTCTTCTTTTGGAGATGCTTACAGGAAGAAGACCAATAGATGAAATCTTTGAAGATGGTCAAAATTTGCATACCTTTGTGGAAAACTCATTTCCTGATAATCTTTTACAGATTCTGGACCCATCCATAGTACTAAACCAAGAAGAACAAAACAGTCAGAATCTTACTCCAACTGTTGAAAAGTGA 2682 0.3766 MKYFSLMLLAFWSIYVHLFVLLTLNSPWIIPKLVASASENETDHMALLEFRKSILSDPHGIFLSWNTCTHFCNWHGITCNPKHQRVLELNLQGYKLKGSISPYIGNLSYMRSINLGDNNFYGEIPQELGRLSQLHNLSVGNNSLVGEIATNLTGCTNLKFLHLGGNNFIDKIPIEIGSLRKLQHLILSNNEFTGEIPLFMGNLSSLTLLAVAGNNLEGSIPHEICSLKSLTWIAFHLNKLRGTFPTCLYNISSLNIISATNNQLNGSLPTNMFHTLPNLHKFLISNNQIIGSIPPSITNASFLSILDADNNYFTGQVPSLSKLQDLRYLSFSGNNLGDNSTDDLEFLKSLTNCSQLQMIDIGFNSFGGHLPNSLGNLSMQLNELYLGGNHIVGEIPSAIGNLIGLVLLSMTGNSIDGTIPTTFGKLQNMQKLRLGRNKLSGGIGAFIGNLSQLFHLDEGKNMLQGKIPPSIGNYQSIPVEVGNLKNLGSLDMSENNLSYHIPPSIGECIVLEYLNLKGNSLNGIIPPSLASLKGLRSLDLSQNSLGGSIPNDLQKISVLQYFNVSLNMLVGEVPKGGVFQNASVLVVTGNKNLCGGISELHLPPCPVDGKKLAKLHPFMLIATIVSAVAFLLIISSSGNFSFVYKGILRPEEKVVAIKVLNLQKRGSQKSFIAECNALKNIKHRNVVPILTCCSGIDYKGQEFKALIFEYMKNGSLEQWLHQIALSAEHSRTLNLDQRLNIMIDVASALHYLHYECEQLIVHCDLKPSNVLLDDDMIAHVSDFGLVRLFSTINCTSSQHTSTIVIKGTIGYVPPEYGMGSEVSTAGDMYSFGILLLEMLTGRRPIDEIFEDGQNLHTFVENSFPDNLLQILDPSIVLNQEEQNSQNLTPTVEK 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00669 893 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 478 602 - -
Phco4g00669 893 Gene3D Ribonuclease Inhibitor 39 319 IPR032675 -
Phco4g00669 893 Gene3D Phosphorylase Kinase; domain 1 634 714 - -
Phco4g00669 893 Pfam Protein kinase domain 637 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00669 893 ProSiteProfiles Protein kinase domain profile. 629 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00669 893 Pfam Leucine rich repeat 511 568 IPR001611 GO:0005515
Phco4g00669 893 Pfam Leucine rich repeat N-terminal domain 42 80 IPR013210 -
Phco4g00669 893 PANTHER OS04G0122200 PROTEIN 226 876 - -
Phco4g00669 893 SUPERFAMILY RNI-like 220 575 - -
Phco4g00669 893 ProSitePatterns Serine/Threonine protein kinases active-site signature. 760 772 IPR008271 GO:0004672|GO:0006468
Phco4g00669 893 SUPERFAMILY Protein kinase-like (PK-like) 637 860 IPR011009 -
Phco4g00669 893 SUPERFAMILY L domain-like 40 336 - -
Phco4g00669 893 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 79 348 - -
Phco4g00669 893 Gene3D Transferase(Phosphotransferase) domain 1 715 893 - -
Phco4g00669 893 SMART LRR_typ_2 532 555 IPR003591 -
Phco4g00669 893 SMART LRR_typ_2 484 508 IPR003591 -
Phco4g00669 893 SMART LRR_typ_2 426 448 IPR003591 -
Phco4g00669 893 SMART LRR_typ_2 179 201 IPR003591 -
Phco4g00669 893 SMART LRR_typ_2 276 300 IPR003591 -
Phco4g00669 893 SMART LRR_typ_2 203 227 IPR003591 -
Phco4g00669 893 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 711 893 - -
Phco4g00669 893 Gene3D Ribonuclease Inhibitor 320 613 IPR032675 -
Phco4g00669 893 SMART serkin_6 629 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00669 893 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 349 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00669 Phco-Chr4 5063326 5066375 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Phco4g00669 Pkinase 1e-39 CL0016