Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00666 ATGATTTTTCAGCCTATTGTAGAAGATGGAGTGTTTCGTTTTGATTGTTCTGTAAAGGATAGAGAAGCAGCATCTCCCAGTATTTCTTTTGTGAATGGCAAGGACAGAGACACACCTATCTCTACTGAGAAGGTTCCTCTGTATAACCCTACGTTTGAGATTCGACTAGAGCAGCAGATTGTCAAACTTGAGCTGCCTGTAGGTTCCTCTCTTTATGGAACGGGAGAAGTTAGCGGACAGCTTGAGAGGACGGGCCAAAGAGTTTACGCATGGAACACTGATGCATGGGGTTATGGACCTGAAACTACATCCTTGTACCAGTCACATCCATGGGTGTTAGCTGTTCTTCCAAATGGTGAGGGACTAGGAATCCTTGCTGACACTACAAGGCGCTGTGAGATTGATCTGAGGAAAGAATCAACAATACAGTTTGTTTCTCCATCTTCATATCCTGTCATTACATTTGGTCCTTTTGCTTCACCCACTGCAGTGTTAATTTCTCTATCAAAAGCAATTGGAACTGTATTTATGCCCCCAAAATGGTCTTTAGGCTATCATCAATGCCGTTCGAGTTATTTATCTGATAAAGTTCTGGAGGTTGCAAAAACGTTCCAGAAGAAGTGCATACCTTGTGATGTGATATGGATGGAGACTGATTACATGGATGGTTTTCGTTGTTTCACATTTGACAAGGACCGTTTCCAAGATCCCGTGTCTTTGGTGAAAGATCTCCATTGTAGTGGTTTTAAAGTCATTTGGATGCTTGATCCTGGAATTAAGCAGGAAGAGGGTTATTTTGTATATGACAGTGGTTCTAAAAATGATGTTTGGATCCAAAATGCAGATGAAACTCCTTTTGTAGGGGAGGTGTGGGCTGGGCCTTGCGTCTTCCCTGACTATACACAGTCAAAAGTTCGTGCATGGTGGGCAAGTTTAGTTAAAGATTTCATTTCCAGTGGTGTTGATGGTATATGGAATGATATGAACGAACCAACTATTTTTAAGGTTGAAACAAAAACAATGCCTGATATCAATGTTCACAGAGGAGATAGTGAACTTGGAGGCTGTCAGAATCATTCTTTCTATCACAATGTGTATGGTCTTTTGATGGCAAGATCAACCTATGAAGGAATGAAACTAGCTAATGAAGAGAAGCGTCCTTTTGTTCTTACAAGAGCTGGATTCATTGGCAGCCAAAGGTATGCAGCAACATGGACTGGTGATAATCTTTCAACCTGGGAGCATTTTCATATGAGTATCTCCATGGTACTTCAGCTGGGACTTAGTGGTCAGCCACTTTCAGGTGCTGATATTGGTGGATTTGCTGGAAATGCAACACCTAGACTTTTTGGAAGGTGGATGGGTGTTGGTTCCTTATTTCCCTTTTGTCGAGGGCATTCTGAAGCTTGTACAACTGATCACGTACCTTGGTCTTTTGGGGAAGAGTGTGAAGAAGTTTGCCGATTGGCATTGAAGAGGCGATACCGCCTAATTCCTCTTATCTACACTCTTTTTTATTTTGCTCATACTCGGGGCACACCAGTGGCAACCCCTACTTTCTTTGCTGATCCAAAAGATCCTAGCCTGAGGAAGCTTGAAAATTCATTTTTGCTCGGTCCAGTCTTAGTGTATGCAAGCACCATACATGCACAGGGGTTGGATAAATTGGAGATTACTTTGCCTAAGGGGATATGGTTGCGTTTTGATTTCAATGATGCACATCCGGATTTGCCAGCCTTATACTTAAAAGGTGGCTCAATTATTCCAGTGGGCGTCTCTGTTCAGCATGTTGAAGAAGCTAATCCTTCAGATGACTTGACTCTTCTTGTGGCTTTAGACGAACATGGAAAAGCTGAAGGTGTTCTTTTTGAGGATGATGGTGATGGATACGAGTTCACAAAAGGCAATTATTTATTAACACATTATGTGGCTGATCTTAAATCATCAGTTGTTACTGTGAGTGTACACAAAACTGAAGGATCATGGGAAAGGCCTAAACGCCATCTGCATATTCAATTATTGCTGGGTGGGGGTGCAATGGTTGATACATGGGGAACTGATGGAGAAGTTCTGCAACTAATCTTGCCTTCTGAAGACGAGGTGTTGAAACTAGTATCTACTAGCGAGACGCAGTACAAGGACCGCTTGGAAAATGCAATTCCAATTCCTGATGTAGAAGTGGTTTCTGGACCCAGGGGAACAGAAAGGACTCTCATTGAATGGAAAAGTGACATAGAAGACCATGTTAGTAAGATGTCTAAGGAGGTGCTTATTCCAACTGATGGAGCAGTAAGAAAGGCCGGTGATTGTAGTGATGCATTTAACACTACAGAGGTTTTCCCTTCTCGAGATGCTATGCTGAATTGGGCTCGAGAAGTAGCAAGAGTGAATGGATTTGTCCTTACTATTTTGAGGTCCGAAACATGTACAAGAAGTAATAAAAAGAATAACAAAGGGAAGACATATGTAATTATGGGTTGTGAAAGGAGTGGAAAATATAGACCATACAAGAATACATTATCTAAGGTGACTAGTACCAAAAAATGTGAGTGTCCCTTCAAGCTCAGGGCAAAAGCTTTGAAAAAGAATGAAAGATGGGTTGTTAAGGTAATGTGTGGTTGTCACAACCACGACTTAGGGGAAACATTGGTGGTGGGACATTCATATGCTGGTCGGTTAAGTGCTGAAGAGAAGTCTATAGTCATTGATATGACAAAGAACATGGTGGAGCCGAGAAACATACTACTAACTTTGAAAGATCATAATAATGAGACTACTATCAGGCATATTTACAATGCTCGACAAGCTTATCGATCCTCTCAGAAAGGCCCTAGGACAGAAATGCAAAACCTACAAAAGTTATTGGAATATGATCAATATGTATATTGGAATAGAAAGGTGGATGGTTCTGATGCTATCAGTGATATATTTTGGACACATCCAGACGCCATCAAACTTCTAAGTTCTTTCCACATTGTCTTGCTTCTTGATAATACTTATAAAGTCAATAGGTATAGATTGCCACTACTTGAGATTGTCGGTGTTACTTCAACAGAGTTAACATTCTCTGTGGCATTTGCTTATCTAGAGTCTGAGCAAGTTGATAACTTTACTTGGGCACTGCAGAAGTTAAGAGGATTGATTGTCAAAGACAGTGAGATACCTCCAGTAATTGTAACTGTTAGAGACATTGCTCTGATGAATGCAGTGCAGGCGGTCTTTCCAAGCTCTTCTAATTTGTTATGTCGTTTTCATATAGGCAAGAATGTGAAGGCTAAATGCAAGATGATAGTTCATCCGAAGGAGCAATATGACTTGGTGATGGATGCATGGCACAATGTTATGAATTCTCCTAATGAGGGTGAGTATATGCAACGTTTGGCATTATTTGACAAAGTTTGCTCAGATTTTCCAAATTTTGGCGATTATGTGAAAGATACGTGGCTTACTCCTCACAAGGAAAAATTTGTCATGGCGTGGATAGATAAAGTGATGCATTTGGGAAACACAACACTTAATAGAGTGGAAACAGCACATTGGAGATTGGAGAACTTGCTTGAAGATAGTAAGGGGGACATTTGTAGTTGTTGGGATGCTATGAACAACATGATTAAATTGCAACACAAGGAGATTAAGAGCTGTGGGGCACGTGCTTCAGGGACTTCCTCTAGGGACAGTGACAGCAGAGCCAGTGGTGGTAACAATGTGCATTTCATCGTCTACAATAATTTCATATAA 3738 0.4101 MIFQPIVEDGVFRFDCSVKDREAASPSISFVNGKDRDTPISTEKVPLYNPTFEIRLEQQIVKLELPVGSSLYGTGEVSGQLERTGQRVYAWNTDAWGYGPETTSLYQSHPWVLAVLPNGEGLGILADTTRRCEIDLRKESTIQFVSPSSYPVITFGPFASPTAVLISLSKAIGTVFMPPKWSLGYHQCRSSYLSDKVLEVAKTFQKKCIPCDVIWMETDYMDGFRCFTFDKDRFQDPVSLVKDLHCSGFKVIWMLDPGIKQEEGYFVYDSGSKNDVWIQNADETPFVGEVWAGPCVFPDYTQSKVRAWWASLVKDFISSGVDGIWNDMNEPTIFKVETKTMPDINVHRGDSELGGCQNHSFYHNVYGLLMARSTYEGMKLANEEKRPFVLTRAGFIGSQRYAATWTGDNLSTWEHFHMSISMVLQLGLSGQPLSGADIGGFAGNATPRLFGRWMGVGSLFPFCRGHSEACTTDHVPWSFGEECEEVCRLALKRRYRLIPLIYTLFYFAHTRGTPVATPTFFADPKDPSLRKLENSFLLGPVLVYASTIHAQGLDKLEITLPKGIWLRFDFNDAHPDLPALYLKGGSIIPVGVSVQHVEEANPSDDLTLLVALDEHGKAEGVLFEDDGDGYEFTKGNYLLTHYVADLKSSVVTVSVHKTEGSWERPKRHLHIQLLLGGGAMVDTWGTDGEVLQLILPSEDEVLKLVSTSETQYKDRLENAIPIPDVEVVSGPRGTERTLIEWKSDIEDHVSKMSKEVLIPTDGAVRKAGDCSDAFNTTEVFPSRDAMLNWAREVARVNGFVLTILRSETCTRSNKKNNKGKTYVIMGCERSGKYRPYKNTLSKVTSTKKCECPFKLRAKALKKNERWVVKVMCGCHNHDLGETLVVGHSYAGRLSAEEKSIVIDMTKNMVEPRNILLTLKDHNNETTIRHIYNARQAYRSSQKGPRTEMQNLQKLLEYDQYVYWNRKVDGSDAISDIFWTHPDAIKLLSSFHIVLLLDNTYKVNRYRLPLLEIVGVTSTELTFSVAFAYLESEQVDNFTWALQKLRGLIVKDSEIPPVIVTVRDIALMNAVQAVFPSSSNLLCRFHIGKNVKAKCKMIVHPKEQYDLVMDAWHNVMNSPNEGEYMQRLALFDKVCSDFPNFGDYVKDTWLTPHKEKFVMAWIDKVMHLGNTTLNRVETAHWRLENLLEDSKGDICSCWDAMNNMIKLQHKEIKSCGARASGTSSRDSDSRASGGNNVHFIVYNNFI 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00666 1245 SUPERFAMILY (Trans)glycosidases 170 512 IPR017853 -
Phco4g00666 1245 Gene3D glycosyl hydrolase (family 31) 20 156 - -
Phco4g00666 1245 SUPERFAMILY Galactose mutarotase-like 53 141 IPR011013 GO:0003824|GO:0005975|GO:0030246
Phco4g00666 1245 Pfam Glycosyl hydrolases family 31 160 588 IPR000322 GO:0004553|GO:0005975
Phco4g00666 1245 Gene3D Glycosidases 176 496 - -
Phco4g00666 1245 PANTHER ALPHA-GLUCOSIDASE 63 643 - -
Phco4g00666 1245 Gene3D - 585 716 IPR013780 -
Phco4g00666 1245 ProSitePatterns Glycosyl hydrolases family 31 active site. 323 330 IPR030458 -
Phco4g00666 1245 CDD GH31_glucosidase_II_MalA 173 512 - -
Phco4g00666 1245 Pfam MULE transposase domain 993 1089 IPR018289 -
Phco4g00666 1245 Pfam Transcription factor AFT 822 879 IPR014842 GO:0000981|GO:0036086
Phco4g00666 1245 Pfam Domain of unknown function (DUF5110) 606 674 IPR033403 -
Phco4g00666 1245 CDD GH31_N 51 173 - -
Phco4g00666 1245 Gene3D - 497 580 IPR013780 -
Phco4g00666 1245 Pfam Galactose mutarotase-like 70 135 IPR025887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00666 Phco-Chr4 5026874 5039167 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco4g00666 Glyco_hydro_31 1.4e-123 CL0058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00666 4 5026874 5039167 Phco4g00666 4 5026874 5039167 ECH