Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00655 ATGAAAGATTTCAACATTGAAAACAACAACTTCCACGGCAAAATCCCACAAGAGTTAGGATTGTTGTCACAATTACAACAACTCTCTCTTCAAAATAACTCCTTAGTAGGTGAAATTCCTACAAATTTGACAGGATTTGCTCATCTCACAAGTTTACTCTTGAATGGCAACAATCTCACTGGAAAAATACCTATTCAAATTGTCTCACTTCGAAAGCTTCAACTTCTTGCCCTTTATAGGAATCATGTGACAGGAGAAATCCCATCCTTTATAGGAAATATTTCATCTTTGATTCGTTTCTCTGTGTCTGAAAACAATTTAGAGGGAGATGTTCCACAAGAAATATGTCGTCTAAAAAGCTCGACACTTCTATCACTTAATTTCAACAAACTAAGTGGAACAATTCCTTTGTGTGTTTATAATATGTCCTCTCTTACTGTGATCTCAGCTACAGAAAATCTGTTCAATGGCTCCCTTCCACCCAACATGTTTCACACCCTCTCCAATCTCCAAACATTTTATTTTAATCTCAACCAAATCTCAGGCTCAATCCCACCATCCATCACAAATGCATCTAATCTTTCAATATTTGAAATGGGTGGAAACAAACTTACTGGACGAGTTCCAAGTATGGGGAAGCTAAAAGATCTTTATTATTTTGTTGTTGATAAAAACTTTCTTGGTAACAATTCAATTGATGATTTGGTGTTTTTAGAATCATTAACAAATTGTAGTAAGTTGAATGTCTTAGATTTAGCCTACAATAATTTTGGTGGCCATTTGCCAAATTATTTGGGCAACTTATCCAATCAACTCCCTCAACTATATCTTGGAGGTAATCAGATATCTGGAGAAATTCCTGCTGCACTTGGTAATCTAATTGCCTTAAATGTTTTGGCCATGGAAAATAACTATATCACTGGGAATATCCCAACAACTTTTGGAAAGTTTCAGAAAATGCAGTTTTTAAATTTGGGCTCAAACAAGTTGTCAGGAGATATTAAAGCCTGGATAGGGAATCTTAGTCAATTATTTCGTCTGGAAATAGGAGAAAATATGTTACAAGGAAATATTCCACCAAATCTAGGAAACTGTCAAAAGTTACAATACTTAGACATTTCGGATAACATCCTTACAGGAATCATACCCATAGAGGTTTTTAAGCTTTCATCTCTAACAAACGTGTTGGATTTGTCACACAACTCATTCAGTGGTAGTATACCAAAAGAAGTGGGCAATTTAAAAAACCTTAATTCGTTGTACATGTCTCATAATCATCTCTCAGGTGTCATTCCTGATAGCATTGGAAAATGCATAATGTTGGAAGAAATCTATTTGCAAGGGAATTCTTTACAAGGAAGCATACCATCCTCTTTGGCATCACTCAAAGGACTTGAAAAGTTAGACCTCTCACGAAACCAATTATCTGGATCAATTCCCAATGTTCTGCAGACTATTTCTTTCTTAGAATACTTGAATGTGTCATTTAACATGTTGGATGGTGAGGTGCCAACTGAAGGTGTCTTCCGAAATGCAAGTGGGCTAGTGATTTCTGGAAATAGTGGCCTTTGTGGAGGTATTTCGAAACTACAGCTACCCTCATGTCCTGTCAAAGGTAAGAAACTTGTAAAACACAAGTTCAAGTTGATCATAGTGTCAGTGATGGTTAGTGTGGTTGTTGTTTTTCTCATGCTAGTTATTCTAACTATCTATTGGATGAGGAAAACGACTAAAAAAACATCATTGGATTCGCCAACAATTAACCTGCTAGCTAAAGTTTCATACCAAAGCCTATACAATGGAACTGATGGCTTCTCAGTTACAAATTTGATAGGGTGTGGGATTTTTAGTTCTGTCTATAAAGGAACTTTTGAGTCAGAACATAAAGTAGTTGCCATTAAGGTTCTTAACCTTAAACATAAAGGATCTCACAAGAGTTTCCTTGCTGAATGCAATGCACTGCGAAGTATTAAACATAGAAATCTGGTTCAGATTTTGACGTGTTGTTCTAGCACAGATTACAAAGGTCAGGAATTTAAAGCTTTAATTTTTGAGTACATAAGAAATGGAAGCTTGGAGCAATGGTTACACCCAAGGACACTAAATGAAGAACATCCAAGATTATTGAGTCTTGATCAAAGATTAAATATCATCATTGATGTAGCTACTGCCTTAAATTATCTTCACCATGATTGTGAGCCAACAATCATTCATTGTGATTTGAAGCCAAGCAATGTCCTTCTTGATGATGATATGATTGCTCATGTGAGTGATTTTGGCATAGCTAGATTTCTCTCAGCTACAACTGATGGCACCACTTCTAAGAAGACAAGTACAATTGGAATAAAGGGTACTGTTGGCTATGCTCCTCCAGAGTATGGAATGAGCTCTGAGGTATCAACTTTAGGGGACATGTATAGCTTTGGAATTCTGGTGTTGGAGATTCTAACAGGCAGAAGACCTACAGATAAAATGTTTGAAGGTGGTCTAAATCTTCATAACTTTGTTTCAATTTCATTTCCTAGTAATCTTCTGCAAATTTTGGACCCACCACTTGTTCCAACATATGAACCAACAACATTGGATGGAAACAACTCACATCTTAATCGAAATGTCAAGGAATGCATAGTTTCACTTTTCGTAGTTGGACTTGCTTGTTCTAAGGAATCACCAAAAGAAAGAATGAGTGTGGTTGATCTTATCAAGGAGCTTAGTCGAATCAAAATGGTCTTTCTTGCTGCTGAGTAA 2748 0.3624 MKDFNIENNNFHGKIPQELGLLSQLQQLSLQNNSLVGEIPTNLTGFAHLTSLLLNGNNLTGKIPIQIVSLRKLQLLALYRNHVTGEIPSFIGNISSLIRFSVSENNLEGDVPQEICRLKSSTLLSLNFNKLSGTIPLCVYNMSSLTVISATENLFNGSLPPNMFHTLSNLQTFYFNLNQISGSIPPSITNASNLSIFEMGGNKLTGRVPSMGKLKDLYYFVVDKNFLGNNSIDDLVFLESLTNCSKLNVLDLAYNNFGGHLPNYLGNLSNQLPQLYLGGNQISGEIPAALGNLIALNVLAMENNYITGNIPTTFGKFQKMQFLNLGSNKLSGDIKAWIGNLSQLFRLEIGENMLQGNIPPNLGNCQKLQYLDISDNILTGIIPIEVFKLSSLTNVLDLSHNSFSGSIPKEVGNLKNLNSLYMSHNHLSGVIPDSIGKCIMLEEIYLQGNSLQGSIPSSLASLKGLEKLDLSRNQLSGSIPNVLQTISFLEYLNVSFNMLDGEVPTEGVFRNASGLVISGNSGLCGGISKLQLPSCPVKGKKLVKHKFKLIIVSVMVSVVVVFLMLVILTIYWMRKTTKKTSLDSPTINLLAKVSYQSLYNGTDGFSVTNLIGCGIFSSVYKGTFESEHKVVAIKVLNLKHKGSHKSFLAECNALRSIKHRNLVQILTCCSSTDYKGQEFKALIFEYIRNGSLEQWLHPRTLNEEHPRLLSLDQRLNIIIDVATALNYLHHDCEPTIIHCDLKPSNVLLDDDMIAHVSDFGIARFLSATTDGTTSKKTSTIGIKGTVGYAPPEYGMSSEVSTLGDMYSFGILVLEILTGRRPTDKMFEGGLNLHNFVSISFPSNLLQILDPPLVPTYEPTTLDGNNSHLNRNVKECIVSLFVVGLACSKESPKERMSVVDLIKELSRIKMVFLAAE 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00655 915 SMART LRR_typ_2 22 46 IPR003591 -
Phco4g00655 915 SMART LRR_typ_2 389 413 IPR003591 -
Phco4g00655 915 SMART LRR_typ_2 167 191 IPR003591 -
Phco4g00655 915 SMART LRR_typ_2 341 365 IPR003591 -
Phco4g00655 915 SMART LRR_typ_2 462 485 IPR003591 -
Phco4g00655 915 SMART LRR_typ_2 486 511 IPR003591 -
Phco4g00655 915 SMART LRR_typ_2 414 438 IPR003591 -
Phco4g00655 915 ProSitePatterns Serine/Threonine protein kinases active-site signature. 736 748 IPR008271 GO:0004672|GO:0006468
Phco4g00655 915 SUPERFAMILY L domain-like 4 226 - -
Phco4g00655 915 Gene3D Ribonuclease Inhibitor 228 542 IPR032675 -
Phco4g00655 915 Pfam Leucine rich repeat 441 499 IPR001611 GO:0005515
Phco4g00655 915 Pfam Leucine rich repeat 367 427 IPR001611 GO:0005515
Phco4g00655 915 PRINTS Leucine-rich repeat signature 462 475 - -
Phco4g00655 915 PRINTS Leucine-rich repeat signature 368 381 - -
Phco4g00655 915 SMART serkin_6 605 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00655 915 Gene3D Phosphorylase Kinase; domain 1 587 686 - -
Phco4g00655 915 SUPERFAMILY Protein kinase-like (PK-like) 579 904 IPR011009 -
Phco4g00655 915 FunFam Inactive leucine-rich repeat receptor-like protein kinase 242 535 - -
Phco4g00655 915 SMART LRR_sd22_2 167 193 - -
Phco4g00655 915 SMART LRR_sd22_2 365 386 - -
Phco4g00655 915 SMART LRR_sd22_2 414 435 - -
Phco4g00655 915 SMART LRR_sd22_2 22 48 - -
Phco4g00655 915 SMART LRR_sd22_2 462 484 - -
Phco4g00655 915 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 241 - -
Phco4g00655 915 FunFam LRR receptor-like serine/threonine-protein kinase EFR 575 686 - -
Phco4g00655 915 Gene3D Transferase(Phosphotransferase) domain 1 687 911 - -
Phco4g00655 915 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 687 915 - -
Phco4g00655 915 Pfam Protein kinase domain 607 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00655 915 Gene3D Ribonuclease Inhibitor 1 227 IPR032675 -
Phco4g00655 915 ProSiteProfiles Protein kinase domain profile. 605 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00655 915 ProSitePatterns Protein kinases ATP-binding region signature. 611 634 IPR017441 GO:0005524
Phco4g00655 915 SUPERFAMILY L domain-like 272 525 - -
Phco4g00655 915 PANTHER OS04G0122200 PROTEIN 117 909 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00655 Phco-Chr4 4924846 4927707 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Phco4g00655 Pkinase 3.6e-39 CL0016