Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00605 ATGGAGGGTGGAGGAAGAGAAAGTTATAATGGAGTGGTGATGACTATGACACGAGACCCGAAGCCAAGGCTAAGATGGACAGCAGATCTTCATGATCGCTTTGTGGATGCAGTCACAAAGCTTGGTGGCCCCAATAAGGCGACTCCCAAGTCTGTTCTGAGGTTAATGGGGTTGAAAGGTCTGACACTATATCATTTGAAGAGCCATTTACAGAAGTACAGACTTGGACAGCAGGCTCGAAAAGAAAACGAGGAACTGAACAAAGAGAATAGTAGATGTTCGTTTGTAAATTTTAGTAATCGTTCTTCAGGGCCTAACACCAGTTACAGAGGTGATAATGAAGGGGGAGAGATCCCAATAGCAGAAGCACTGAGGCATCAGATTGAAGTTCAAAAGAGATTGGAAGAGCAGCTCGAGGTGCAGAAGAAGTTGCAGATGAGAATAGAGGCTCAAGGGAAGTATTTGCAAGCAGTGTTAGAGAAAGCTCAGAGAACCCTTTCCTTGGATGGATCAGGAAGTCTTGAAGCATCAAGAGCTCAGTTGACTGAATTCAACTCTGCTTTGTCAAATTTCATGGAAAATATGAATAAAGATAGCAAAGAAAACATAATAGAAGTGACTGACTTTTATAATAAGAACCATGGCTCAGATTTCCATTATGAGGAAGTAGGGAGAGAACAAAATAGGGATCAAAAGCCCAAGATTGAAGGGGGTTCAATACAGTTTGACTTGAACATTAAGGGTAGCAATGATCTTGTATCTGCAGGTGGGGCTGAAATGGATGTCAATATGATTTCATACAGGGGATTGATGCTAAAATATCAATCACAGACCCTTTTCAAAATCCATGCTATTCAGTTAAAAATGGTTACATTAGTTTTTCTCTTTTCACTCCCTAGTTCAAATGCTTGCAATTGCAACATCAACAATAATCGAGGTGACCATTATTTTCTTCTATCTTCGGGAATTCAGATGAAAAATAAAATTTCACAATTACAGCAGACATGA 1008 0.4008 MEGGGRESYNGVVMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPNKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQARKENEELNKENSRCSFVNFSNRSSGPNTSYRGDNEGGEIPIAEALRHQIEVQKRLEEQLEVQKKLQMRIEAQGKYLQAVLEKAQRTLSLDGSGSLEASRAQLTEFNSALSNFMENMNKDSKENIIEVTDFYNKNHGSDFHYEEVGREQNRDQKPKIEGGSIQFDLNIKGSNDLVSAGGAEMDVNMISYRGLMLKYQSQTLFKIHAIQLKMVTLVFLFSLPSSNACNCNINNNRGDHYFLLSSGIQMKNKISQLQQT 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00605 335 Pfam MYB-CC type transfactor, LHEQLE motif 119 165 IPR025756 -
Phco4g00605 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Phco4g00605 335 Coils Coil 121 151 - -
Phco4g00605 335 Gene3D - 20 78 - -
Phco4g00605 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 13 209 IPR044848 GO:0003700
Phco4g00605 335 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Phco4g00605 335 NCBIfam myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Phco4g00605 335 SUPERFAMILY Homeodomain-like 21 78 IPR009057 -
Phco4g00605 335 FunFam Myb family transcription factor 20 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00605 Phco-Chr4 4589392 4592080 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco4g00605 Myb_DNA-binding 1.9e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00605 4 4589392 4592080 Phco4g00605 4 4589392 4592080 ECH