LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco4g00561	ATGGGTTACGAAGACAATCCGTATCGCGACGAGGACGGTGAGCCCTTGATGGACTACGACGACGTTCAATCCGACCGCGAGCCCTCCCCGGAGCCGCGTCACCAGCTCGACGATTACGAGGACGATGTCAACGGCGAGTGGCGCGGCCGGGATCGGTCGCAGACGCCGGTGTACGATAACGATGCGGCGCGCTCGAAGCCACGGAAGAGGCTGATCAAGAAGAGCGACGCTGGGAAGCAGTCGGTGGCGCCGGAGCTCGAGGATGAGGAGGAGGAGGGGTATGTTCCTGAGGCGAGGTTTGACGAGGAAGATGGAAGGAAGAGGAAGAAGGGAAAGGAGGTTGGGAGTGGGAAGAAGGAGAAAAGGCTGAAGGGGGAACAGAGGTTCGGTAGTGGCGGTGGATCCAAATTTGGGGGTTCCAAAAAAGGTTTTGGTGGTAAGGCTGGGAAGGATCATGATGGTGAAGTTAAGGAGATGTGGGATACAATTGCTGGGGGAGATTCTGAGGATGATCATGAGGGTGTCAGGGATCTGGATGATGACAACTTTATAGATGACACTGGAGTGGAACCTGCTTATTATGGTAGTGATGAACCACGTTCACCTGGTGATGCTCCTCAGGCAGAAGAAGGTGAAGAGGATGCAGAAATGAAGGATCTTTTCAAGATAGGAAAGAAAAGGAAGAAGAATGAGAGAACTCCTGCTCAAATAGCATTACTAGTGGAGAATGTCATGGCTGAGCTTGAGGTTACAGCTGAGGAGGATGCTGACCTTAATAGACAGGGGAAACCTGCTATTAATAAACTAAAGAAGTTGACTCTTCTCACAGAAGTCCTCTCAAAGAAACAGCTCCAACTAGAGTTTTTAGATCATGGAGTCTTAACTTTATTGAAGAATTGGCTTGAGCCACTCCCTGATGGAAGCTTGCCAAATATAAATATACGCACTGAAATTTTGAGGATTTTGAACGATTTTCCTATAGACCTAGAGCAGTATGATAGAAGAGAACAACTGAAAAAGAGTGGGCTTGGAAAGGTGATTATGTTTTTATCAAAATCTGATGAAGAAATCAGTGTAAATAGGAAACTAGCCAAGGAGCTGGTTGACAAGTGGAGCCGGCCTATATTTAATAAGAGTACCCGATTTGAAGACATGAGAAATGTAGAAGATGATAGGGTTCCTTTTAGGAGACCATCGGTTAAAAAGCCAACTAATAAAGCTGCAGGAATATCGAGAGATAGTGATCTTGATTTGGAAATTTCACAGCCTAGGGCTGGAGAATCCTCTTCTAGGCAGCATGCTTCGAGGCCCGAAGCAACACCTCTGGATTTTATTATACGACCTCAATCTAAAATTGATCCAGACGAGATTAGAGCACGAGCAAAGCAAGCTGCCCAAGATCAGCAGCGAATGAAGATGAATAAGAAATTGCAGCAATTGAGAGCACCAAAAAAGAGGCAGCTTCAGGCTACAAAACTGAGTGTGGAAGGTCGTGGTATGGTCAAATATTTGTAG	1515	0.468	MGYEDNPYRDEDGEPLMDYDDVQSDREPSPEPRHQLDDYEDDVNGEWRGRDRSQTPVYDNDAARSKPRKRLIKKSDAGKQSVAPELEDEEEEGYVPEARFDEEDGRKRKKGKEVGSGKKEKRLKGEQRFGSGGGSKFGGSKKGFGGKAGKDHDGEVKEMWDTIAGGDSEDDHEGVRDLDDDNFIDDTGVEPAYYGSDEPRSPGDAPQAEEGEEDAEMKDLFKIGKKRKKNERTPAQIALLVENVMAELEVTAEEDADLNRQGKPAINKLKKLTLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTEILRILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEISVNRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRVPFRRPSVKKPTNKAAGISRDSDLDLEISQPRAGESSSRQHASRPEATPLDFIIRPQSKIDPDEIRARAKQAAQDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMVKYL	504

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco4g00561	504	MobiDBLite	consensus disorder prediction	449	465	-	-
	Phco4g00561	504	SUPERFAMILY	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	290	378	IPR035441	-
	Phco4g00561	504	Gene3D	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	234	381	IPR035441	-
	Phco4g00561	504	ProSiteProfiles	TFIIS N-terminal domain profile.	295	378	IPR017923	-
	Phco4g00561	504	MobiDBLite	consensus disorder prediction	394	484	-	-
	Phco4g00561	504	MobiDBLite	consensus disorder prediction	1	66	-	-
	Phco4g00561	504	MobiDBLite	consensus disorder prediction	1	215	-	-
	Phco4g00561	504	PANTHER	PROTEIN IWS1 HOMOLOG 1	1	504	IPR044204	GO:0009742\|GO:0032784
	Phco4g00561	504	MobiDBLite	consensus disorder prediction	99	127	-	-
	Phco4g00561	504	Pfam	TFIIS helical bundle-like domain	322	375	IPR017923	-
	Phco4g00561	504	MobiDBLite	consensus disorder prediction	145	182	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco4g00561	Phco-Chr4	4169378	4172471	Dispersed/Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	IWS1	Phco4g00561		Med26	2.4e-13	No_clan