Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00554 ATGCTTTTCTGTTGCTACACGATAGGGTTGTGTGTTGGACTGACCTTGGTTATTGTTGAGGTCCCTCTGACAAAGGAAGAGCTTCGTCAGGAGGTTGTGGAAGAGGCGTTGAAAGAATCCTCCTATCAAAAAAAGGGGAAGATGAAAAAAATGCGTGAACTTGCAGAAATTCTTAAAGAAAACAAGGCCTTGAGTCGTGCACTTGATCATCAAGCGACATTCATTGGTACGCTAGAGAAAGCTGTTAGCCGTTTGGAAGAAGTTTTGGCGGACAAAGAAAAGCGGCAACAAGGTGATGAACGTAATTTGTCCAATGAAAACCATGATGACGATGACTGTGGAATGTCCATTCAACCAATTGCAGTGGATTATTCCAATGTCAAGTTCGGTAACGATGAAGAAAAATGCTTAAGCAAAATGGAAGGTTTATCCTCTGTAGTGAATGCAAGAAGTAATATGTACACGCGAATGAAGACTGCATTAAATTGGACTGACATGTGGTGTTCGATGTTTAGACAGGAAGTTTTGAATGATGCAGTACATCGGTTAAGGATATGTAACCGCTGTAATATCACAACAATCGAACGGAAAAGATCATGGTTAAAAGATGGTTTAGGTAGACATCGCTTAGCCGCAGGTACTTGTGTCATGCCGATAATGGAAGACCACGATGACTTAGGCCTTGATGATATTACTCTGCTTCAAGAGGGTTCCACGTCAATCCCTACTGATGACACCATGACGGATATTGTTGACTCTTCTGTGCCTGCAGTTGGAATGTCTTTTGACACTGTAGAAGCTGTCAGGACCTTCTACAGAGAATATGGAATAAAAATGGGTTTTGGAACTAGGATACGAAGCTCTAAAAAGGGAAAAGACAATGAAATCAAGTACTTCATGTTAGTGTGTTCTAGGGAGGGTAAATATTTCTCTCCTCTCCCTTCAGAACTAAAGACTCTTCCCACCCAGACCAATGAATGTCAGGCAAGGATAAGTGTTGCAAAGAAGGAGTCGAAATGGTATATCATGTCTGTAATTTACGAACATTCCCATGACCTAAGTCCAACAAAGTCAAGGTTATTCCGTGGGAATAGGAAAATTACCCTCAGTGCGAGAATAACCCTTGACCTTAACGACGATGCAGGAGTACACGTTAATAAGACTTACCGATCTCTAGTAAGTGCTGCTGGAGGTTACGACAACAGGTCATTTGTTGAGCGTGACGTCCGAAACTATGTAAGCCAGCAAAGACGTGCCCTGGGGAAGGATGGGGATGGTCGCACATTATTGGCCCACTTTTCACGCATGCGAGAATTGAATAGGGATTTCTTCTTTGAAATCGACATTGATGATGAAAATCACATTAGAAATGTCTTTTGGGCAGATGCTAGAAGCCGGGCTGCATGTGAGCATTTTGGAGACGTGGTATCATTTGATACAACGTACCTTACCAATAAATATGACATGCCATTCGCTCCATTTGTTGGTGTTAATCACCACGGTCAGTCAATCCTATTAGGTTGTGGACTTTTGTCCTCCGAAGACACTGAGACATTTATATGGCTATTTAAGTGTTGGTTACGTTGTATGTCCTACAAAGCCCCATCTGGCATTGTTACTGACCAGTGCAGGGCAATGAAGAACGCTGTTGCTGTTGTCTTCCCTGAAACACGTCATAGATGGTGTTTGTGGCACATCATGAAGAAAATACCAGAGAAATTGTCATCATATCAGGATTACAAGAATATGAAACATGCAATGAAGTTCGTCCATCAGTATGACAATGCTTTACAACAGAAAGCTGAGAAAGAGTATGAGGTTGATTTTACCTCCTTAAACACTGTCATTCCTTGTGGGTCTAATTCATCCATTGAGCGACAATTCCAAGCAGAATACACACATCGCAAGTTTGTTGAATTGCAAAACGAATTTAGGGCCAAGATGAATTGTCTCATACAAGATGTCAGTCTTTATGGAAACTCATGTCAGTTTTCTCATATTGCCGAAGTTGCATGTGAGAGTCAAGAAAGAACAGAAAACATACTTCAGGACCTAGAAAGGATGCAAAATTTCGATACAGTGACTGCAGGGAAGAAAAACGTGTACAGTAATTGCCACCACTCACACACTCAGCGTTGCATGAATGATGGATACAACAGTCTTCCAATCAATCCACTCTCAGAAGCAGAACATGACACAGGAATAGGTGTAATGGCAGGGACACTTCCAATACAGATTGACGGACAAAGTGATCGTCATGAATGTGGTGGGTTTTTGTCATTGTTAACCTCAGTGCAATCAAATGTTACAACCGCAGAACAGTGTGCTGGGGGTATTTTGAATGTAGATGGGTTTAACTGA 2361 0.4172 MLFCCYTIGLCVGLTLVIVEVPLTKEELRQEVVEEALKESSYQKKGKMKKMRELAEILKENKALSRALDHQATFIGTLEKAVSRLEEVLADKEKRQQGDERNLSNENHDDDDCGMSIQPIAVDYSNVKFGNDEEKCLSKMEGLSSVVNARSNMYTRMKTALNWTDMWCSMFRQEVLNDAVHRLRICNRCNITTIERKRSWLKDGLGRHRLAAGTCVMPIMEDHDDLGLDDITLLQEGSTSIPTDDTMTDIVDSSVPAVGMSFDTVEAVRTFYREYGIKMGFGTRIRSSKKGKDNEIKYFMLVCSREGKYFSPLPSELKTLPTQTNECQARISVAKKESKWYIMSVIYEHSHDLSPTKSRLFRGNRKITLSARITLDLNDDAGVHVNKTYRSLVSAAGGYDNRSFVERDVRNYVSQQRRALGKDGDGRTLLAHFSRMRELNRDFFFEIDIDDENHIRNVFWADARSRAACEHFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCGLLSSEDTETFIWLFKCWLRCMSYKAPSGIVTDQCRAMKNAVAVVFPETRHRWCLWHIMKKIPEKLSSYQDYKNMKHAMKFVHQYDNALQQKAEKEYEVDFTSLNTVIPCGSNSSIERQFQAEYTHRKFVELQNEFRAKMNCLIQDVSLYGNSCQFSHIAEVACESQERTENILQDLERMQNFDTVTAGKKNVYSNCHHSHTQRCMNDGYNSLPINPLSEAEHDTGIGVMAGTLPIQIDGQSDRHECGGFLSLLTSVQSNVTTAEQCAGGILNVDGFN 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00554 786 Coils Coil 75 95 - -
Phco4g00554 786 Pfam FAR1 DNA-binding domain 270 354 IPR004330 -
Phco4g00554 786 PANTHER OS01G0519700 PROTEIN 255 591 - -
Phco4g00554 786 Pfam MULE transposase domain 475 569 IPR018289 -
Phco4g00554 786 MobiDBLite consensus disorder prediction 91 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00554 Phco-Chr4 4116926 4122816 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco4g00554 MULE 9.9e-34 CL0219