Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00552 ATGGATAAAACTCCAAAAGAGAAGGAGTCAAAGACGCCACCACCTACATCACAGGAGCAGTCTTCAACCACAGCTACTGGAACAATTAATCCTGATTGGCCTGGATTCCAGGCATATTCTCCTATACCTCCACACGGTTTCTTGGCATCAAGTCCACAGGCTCACCCTTATATGTGGGGTGTCCAGCAATTTATGCCTCCTTATGGTACTCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGCCCATTTGCTATGCCTTCTCCAAATGGCATTGCTGAGGCTTCAGGAAACACTCCTGGCAGCATGGAAGCTGATGGTAAGCCTCCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATCACAGGGAAAAGTAATGAACATGGTAAAACAACAGGCACATCTGCTAATGGAATTCATTCAAAGAGTGGTGATAGTGCAAGTGAAGGGGAAGGCACCAGTGAAGGAAGTGATGCAAATTCTCAAAATGACTCTCAAATGAAATCAGGGGGCAGGCAGGATTCTTTTGAAGATGAACCATCTCAAAATGGCACTTCAGCATATACTCCTCAAAATGGGGGCCTAAGTGCGCCGGCTACAGTGGTCAATCAAACTGTGCCTATCATACCTATCTCTGCAGGTGGTGCTCCTGGAGCTGTTCCTGGTCCCACTACAAACTTAAATATAGGAATGGATTATTGGGGTACACCGGCTCCTTCCAACATTCCTGCACTTGCCAGAAAGGTGCCATCTACTGCAGTTGCTGGATCACGGGATAGTGTTCAATCACAACTCTGGCTACAGGATGAAAGAGAGATTAAAAGGCAAAGGCGAAAGCAGTCTAACAGGGAATCTGCTCGCAGATCCAGGTTGCGTAAGCAGGCCGAGTGTGATGAGTTAGCTCAGCGTGCTGAGGCTTTGAAGGAAGAAAATGCCTCTCTCCGGTCAGAAGTAAGTCGAATCAGGAGTGATTATGAGCAGCTACTCTCCGAGAACACTGCTCTGAAGGAAAGACTTGGGGAACTACCTGCGAATGATCAACATGCGGGTAATGAGGCTCAACAGAATGGACAGACAGAAGGTGTGCAGGGTGGTCATTAG 1179 0.469 MDKTPKEKESKTPPPTSQEQSSTTATGTINPDWPGFQAYSPIPPHGFLASSPQAHPYMWGVQQFMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAMPSPNGIAEASGNTPGSMEADGKPPEVKEKLPIKRSKGSLGSLNMITGKSNEHGKTTGTSANGIHSKSGDSASEGEGTSEGSDANSQNDSQMKSGGRQDSFEDEPSQNGTSAYTPQNGGLSAPATVVNQTVPIIPISAGGAPGAVPGPTTNLNIGMDYWGTPAPSNIPALARKVPSTAVAGSRDSVQSQLWLQDEREIKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVSRIRSDYEQLLSENTALKERLGELPANDQHAGNEAQQNGQTEGVQGGH 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00552 392 SUPERFAMILY Leucine zipper domain 299 355 IPR046347 GO:0003700|GO:0006355
Phco4g00552 392 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 303 318 IPR004827 GO:0003700|GO:0006355
Phco4g00552 392 MobiDBLite consensus disorder prediction 374 392 - -
Phco4g00552 392 Pfam bZIP transcription factor 296 358 IPR004827 GO:0003700|GO:0006355
Phco4g00552 392 Pfam Disordered region downstream of MFMR 130 269 - -
Phco4g00552 392 SMART brlzneu 296 360 IPR004827 GO:0003700|GO:0006355
Phco4g00552 392 MobiDBLite consensus disorder prediction 14 33 - -
Phco4g00552 392 MobiDBLite consensus disorder prediction 1 41 - -
Phco4g00552 392 Coils Coil 316 364 - -
Phco4g00552 392 Gene3D - 299 353 - -
Phco4g00552 392 PANTHER G-BOX-BINDING FACTOR 3-RELATED 12 383 IPR044827 GO:0003700|GO:0006355|GO:0043565
Phco4g00552 392 MobiDBLite consensus disorder prediction 296 322 - -
Phco4g00552 392 MobiDBLite consensus disorder prediction 106 225 - -
Phco4g00552 392 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 298 361 IPR004827 GO:0003700|GO:0006355
Phco4g00552 392 MobiDBLite consensus disorder prediction 358 392 - -
Phco4g00552 392 MobiDBLite consensus disorder prediction 141 225 - -
Phco4g00552 392 CDD bZIP_plant_GBF1 301 351 IPR045314 GO:0003700|GO:0006355
Phco4g00552 392 Pfam G-box binding protein MFMR 5 91 IPR012900 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00552 Phco-Chr4 4060690 4072141 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco4g00552 MFMR_assoc 5.6e-59 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00552 4 4060690 4072141 Phco4g00552 4 4060690 4072141 ECH
Phco4g00552 4 4060690 4072141 Phco8g00286 8 2635595 2641746 PCT