Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00540 ATGTATGGGGATTGCCAAGTTATGTCAAGTATGGGAGGGAACGTAGTAGTGAACTCGGACACTCTCTTCTCCTCCTCGATCCAGAACTCTAACTTCAACTTCATCCCCACCATGCCTTTCCAACCTTTTCCTTCCATGAAAGAAGAAGATGGGATGCTGCGAGGGAAGGAAGAGATGGAGAGTGGGTCAGGAAGTGAACAGGTTGAAGACAAGTCAGGGAATGAGCAAGAGAGTGAACAACCCACAAAGAAGAAACGTTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCTCACCCAGATGATAAGCAGAGGCTGAAACTGAGCCATGAATTGGGCCTTAAACCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGTCGAACCCAGATGAAGGCACAACAAGATCGGGCAGATAATATCCTACTTAGAGCGGAGAATGAGACTCTAAAGAGTGAGAACTATCGGTTACAAGCTGCACTGCGCAACGTTATGTGTCCCAATTGTGGTGGCCAATGCATAATGGGTGCTGATCTGGGTTTGGATGAGCACCAAATTCGCATTGAAAATGCCCGGTTAAGAGAAGAGTTAGAACGCGTGTGTTGCCTGACTTCAAGGTATACTGGGCGTTCATTACAAACAATGGCAGCAGGTCCTACTCTCATGGCCCCTTCATTGGATTTGGATATGAACATATATCCTAGGCACTTTTCGGATCCTGTTGCTCCTTGCACAGAAATGATTCCTGTGCCAATGCTGCCTCCCGAAGCTTCACCATTTTCTGAGGGTGGAGGAGTCTTAATGGAGGAAGAAAAGTCTCTGACCTTGGAGCTCGCAGCTTCTTCCATGGCGGAACTTGTGAAGATGTGTCAGACAAATGAGCCACTTTGGATCCGAAGCAGTGAGGGTGAAAGGGAACTGTTAAATTTTGAAGAGCACGCAAGGATATTTCCTTGGCCTCAGAATCTCAAACACCGAAGTGAGCTGAGGACTGAAGCTAGCCGTGACACTTCTGTAGTTATAATGAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGGTCAAAAATGGATGGAATTGTTTCCTACAATCGTGTCTCGAGCAAAAACTGTCCAAATCATATCTTCTGGTGCTTCTGGTCATGCAAGCGGAACACTTCAGCTGATGTACGCAGAATTTCAAGTTCTTTCTCCTTTGGTGTCCACTCGCGAGACTCATTTTCTTCGTTATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTGTTGACAGCTTTCACCAAAATTTTCACCCTTCTTATCCCAGATACTGCAGGAGATCCTCTGGTTGCGTCATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAGCACGCAAAAGTAGAAGAGAAACCTGTGCATCAGATATTCAGCAACTATGTGTACAGTGGAATGGCATTCGGAGCACAGCGTTGGTTAGGAGTTTTGCAGAGACAGTGCGAGAGGGTCGCGAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTGATACCTTCGCCAGAAGCGCGAAAGAACTTGATGAAACTGGCCCAAAGAATGATAAAAACGTTTGGCCTTAACATGAGTACCTCTGGTGGTCAATCGTGGACAGCCATATCAGATTCCCCTGAAGACACAGTCAGAATCACAACTAGGAAAGTCACGGAGCCTGGCCAACCTAATGGTGTGATTCTAAGTGCTGTTTCAACCACCTGGTTGCCCTATTCTCATACCAAGGTCTTTGATCTCCTCAGGGACGAACGACACAGATCTCAGATGGATGCTCTTTCAAACGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCACTTCTTCGCATAAATGTAGCAAGCAACTCATCCCAGAACGTAGAGCTAATGCTGCAAGAGAGTTGCACCGACCAGTCTGGAAGCTTGGTAGTATACACCACCATTGATGTGGATTCCATCCAGCTAGCCATGAGTGGCGAGGACCCTTCTTGCATTGCCCTTCTCCCCCAAGGCTTCACGATCATGCCAATGCTATCATCACCCAACGTTGACACACCCATCAATGCTAACTCCCCGGAGCCTCCATCTCTCAACTCAGGTTGCCTCCTAACCATGGGGCTGCAAGTTCTCGCCAGCACAATCCCTTCTGCAAAGCTCAATCTCTCAAGTGTCACGGCCATCAACAACCACCTCTGCAACACCTTGCACCAAATTGAAGCTGCTCTTTCTAATAGCAACGAGAATGGCACCAACTTCCTTTGCACTGAACCCACCGCCAGTGCACCTCCCAAGCAGTGA 2376 0.4739 MYGDCQVMSSMGGNVVVNSDTLFSSSIQNSNFNFIPTMPFQPFPSMKEEDGMLRGKEEMESGSGSEQVEDKSGNEQESEQPTKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMKAQQDRADNILLRAENETLKSENYRLQAALRNVMCPNCGGQCIMGADLGLDEHQIRIENARLREELERVCCLTSRYTGRSLQTMAAGPTLMAPSLDLDMNIYPRHFSDPVAPCTEMIPVPMLPPEASPFSEGGGVLMEEEKSLTLELAASSMAELVKMCQTNEPLWIRSSEGERELLNFEEHARIFPWPQNLKHRSELRTEASRDTSVVIMNSVTLVDAFLDGQKWMELFPTIVSRAKTVQIISSGASGHASGTLQLMYAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIKTFGLNMSTSGGQSWTAISDSPEDTVRITTRKVTEPGQPNGVILSAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCIALLPQGFTIMPMLSSPNVDTPINANSPEPPSLNSGCLLTMGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALSNSNENGTNFLCTEPTASAPPKQ 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00540 791 MobiDBLite consensus disorder prediction 53 84 - -
Phco4g00540 791 FunFam Homeobox-leucine zipper protein HDG1 71 157 - -
Phco4g00540 791 CDD homeodomain 84 142 IPR001356 GO:0003677
Phco4g00540 791 SUPERFAMILY Homeodomain-like 75 142 IPR009057 -
Phco4g00540 791 CDD START_ArGLABRA2_like 279 508 - -
Phco4g00540 791 ProSiteProfiles START domain profile. 275 512 IPR002913 GO:0008289
Phco4g00540 791 MobiDBLite consensus disorder prediction 53 91 - -
Phco4g00540 791 Pfam Homeodomain 84 139 IPR001356 GO:0003677
Phco4g00540 791 Gene3D - 69 151 - -
Phco4g00540 791 Gene3D - 330 498 IPR023393 -
Phco4g00540 791 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Phco4g00540 791 SUPERFAMILY Bet v1-like 276 511 - -
Phco4g00540 791 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 80 768 IPR042160 -
Phco4g00540 791 SMART HOX_1 82 145 IPR001356 GO:0003677
Phco4g00540 791 SUPERFAMILY Bet v1-like 527 765 - -
Phco4g00540 791 Pfam START domain 285 509 IPR002913 GO:0008289
Phco4g00540 791 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Phco4g00540 791 SMART START_1 284 509 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00540 Phco-Chr4 3938080 3943363 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco4g00540 START 1.8e-40 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00540 4 3938080 3943363 Phco4g00540 4 3938080 3943363 ECH
Phco4g00540 4 3938080 3943363 Phco6g02509 6 46527623 46531804 ECH