Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00537 ATGGTGGAAAGAAGAGTGACTTTATCTAAGGAAGTTAGGAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCTGTCACTGCCACCCAGACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGCTTCAGCATCATGTGGCATGAGATTGCATGGTAATGCTGATGTCTTTTCCAAACGCAAGGTGGATAAGTTTGATACAAATGACCTGGACTGGACTGATTCAATTCCAGAGTGTCCTGTGTATTCTCCAACAAAAGAGGAATTTGAGGATCCTTTGATTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATCTGCAAGATTATTTCTCCTTTGAGCGCTTCAGTACCTGCTGGGGTTGTCTTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCTCTTCGCCTTGCTGAATGGGATTCTGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAAATTACACGTTTCGTGATTTTGAGAAAATGGCAAACAAGGTATTTGCTAGAAGATATTGCAGTGCTGGATGCCTTCCTGCGACATACTTGGAAAAAGAGTTTTGGAATGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCGTCTTCTCCCGGTGACCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCAAGGTTGCCCAAATCAAGTTTACGGCTCTTGGAAACATTAATTCCGGGAGTAACGGAACCCATGCTGTACATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTGGAAGATCATTATTTGTACAGCATTAATTATCATCACTGTGGGGCATCCAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTACACTAATGATATTTTATCAAGTGATGGGGAAGATGGTGCCTTTGATGTTCTCTTGGGGAAAACAACTCTATTTCCACCAAATATTTTGTTGGAACATGAAGTCCCTGTCTACAAGGCTGTTCAAAAGCCTGGGGAGTTTATAATAACCTTCCCTAGGGCCTATCATTCTGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCGTTAGGGGCTATTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCTCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTCCGTACATGCTTGGAACTTGAAGATTCTGATTTTCCCTCTTCAGACTTCTTTTCTCACAATAGCATTAAGATTTCATTTGTTAACTTGATGCGATTCCATCATTGTGCGCGATGGTTTCTAACGAAATCAAGGGCTTCTATAAGCTTCTCTTCTCATTCCCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGTTACATAGCTTATGTTGACTGCAACTGTCATGCGCATCCTGTATGCCTACGTCACGATGTTGATTCTCTTGACTTCACCTGTGGGAGCAAACACACACTTTATATGAGGGAGGATATTATGGATATGGAAGCTGCAGCCAAGATGTTTGAGCAGGAAGATGGGATATCATATGAGATAAGGAAGCAAACCAAAAGTGGCCAAAACATGTATGCGTATCCTTTATCAAATATGTTTCAGCGAGCCGAGGCAATTGGATACATTCCTTATTGTGAGCTAAAACTTGATTCTGTTGTTGAATTTTATACAACTCCAGAGCACTCAACAAATAATCAAGAATACTGTACACAGAATCAATCTCTCTTTGTACCTTGCTCTGAAAATCAAATACCCTTGGTGTCTGACGTTTCATTTTCATCAGCCACGTCCACTCTTTCTGAATCTCTTGAGAGCTTCTCTACTCCCAAAAATGCTGAAGGGCATACTAATATCAATTTAGGAGGTATCGCTGATTTTGAGGAGTTTGGTGAAAGAATATCCAACAGTGCATGTGAATCTTCATTATCTCCTGCTGTATGCCATGAAAGCTCGGGTAAACCACAGGGTGTTCTTCATAGATTTGATACAAAGCCCATCGCGGACGAGAGTGATTCTGATTCAGAGATATTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCGGAGAGGAGACATATGAATGATGTCATGTCTTCAAAGCAGACTGAGCAGCAGGGACTAAAACGACTGAAGAAAGTCCTTCCTGAAGGAAAGAGTGATCAACCAATGGATTTCAGCAGAACCCATGAATCAAGTTACAAACACAGTCACCCTGTTAACCATAAAGGTCGTGTTGAAGTCTCCTCCAGGGACAGATTTGCAAGGGGTAATGGCATTCCCATTTCTATAAGATATAAGAAATTAGGGAACGAGGAAATAAGTATGCAACGAGATCACCACCAACACCGGAAAGATAGGTTGTTGCAGCGACAGACATTTAGGGCACCGCCTTCCATTGAGATTGAGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCGTTTTTAGGCTTAGAGAGCAGATTGAATTGA 2574 0.4157 MVERRVTLSKEVRNGLEFLKRKRLQRAQSVTATQTNIANMMNRSGGDALRASASCGMRLHGNADVFSKRKVDKFDTNDLDWTDSIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDSEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWNEIGCGKMETVEYACDVDGSAFSSSPGDQLGNSKWNLKKLSRLPKSSLRLLETLIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHSGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSSDFFSHNSIKISFVNLMRFHHCARWFLTKSRASISFSSHSHGTILCSLCKRDCYIAYVDCNCHAHPVCLRHDVDSLDFTCGSKHTLYMREDIMDMEAAAKMFEQEDGISYEIRKQTKSGQNMYAYPLSNMFQRAEAIGYIPYCELKLDSVVEFYTTPEHSTNNQEYCTQNQSLFVPCSENQIPLVSDVSFSSATSTLSESLESFSTPKNAEGHTNINLGGIADFEEFGERISNSACESSLSPAVCHESSGKPQGVLHRFDTKPIADESDSDSEIFRVKRPSSLKAERRHMNDVMSSKQTEQQGLKRLKKVLPEGKSDQPMDFSRTHESSYKHSHPVNHKGRVEVSSRDRFARGNGIPISIRYKKLGNEEISMQRDHHQHRKDRLLQRQTFRAPPSIEIEPKRLKVRGPSFLGLESRLN 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00537 857 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Phco4g00537 857 Gene3D Cupin 88 438 - -
Phco4g00537 857 SMART JmjN_1 87 128 IPR003349 -
Phco4g00537 857 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Phco4g00537 857 SMART cupin_9 232 405 IPR003347 -
Phco4g00537 857 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Phco4g00537 857 FunFam Lysine-specific demethylase isoform A 83 432 - -
Phco4g00537 857 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Phco4g00537 857 MobiDBLite consensus disorder prediction 752 778 - -
Phco4g00537 857 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Phco4g00537 857 Pfam jmjN domain 89 121 IPR003349 -
Phco4g00537 857 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00537 Phco-Chr4 3889018 3894493 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco4g00537 JmjC 1.6e-39 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00537 4 3889018 3894493 Phco4g00537 4 3889018 3894493 ECH