Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00523 ATGGATAGCGGTGGGTCCGCTCCGGCGGCGCCGATTTCGAACGCCAACGCGCCGCCGCCGTTTCTGAGCAAGACTTACGACATGGTGGAAGACCCTTCCACCGACGCGATCGTGTCGTGGAGTGCCACCAACAACAGCTTCATCGTGTGGGACCCACCCGAATTCGCCAGAGACCTTTTGCCCAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTATGGTTTCAGGAAGGTCGATCCAGATCGATGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAATATAACACGACGAAAACCTGCCCATGGTCAAAATCATCAACAGGCTCAGCAACCCCATGGACAGAGTTCATCACTAGGGGCATGTGTTGAAGTCGGAAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTCAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAGACCACTGATAACCAGTTGCAAGCAATGGTTCAGCGTCTTCAGGGAATGGAGCAAAGACAGCAGCAAATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGATTCTTTGCTCAGTTTGTACAACAACAAAATGAGAGCAATAAACGCATAACTGAAGTCAACAAAAAGCGTAGGCTTAAGCGGGAAGGTAATGCAGAAACAGAGTGTACTGCTAATCCAGATGGACGAATTGTTAAATATCAACCTCTGGTGAATGAAGCTGCAAAAGCCATTCTTAAGCAGATCATGAAATGGGATACTTCTCGTGTAGAATCTTTTAATAAAAACCCCGATGACTACATGATTGGTGATGCTTCATCATCTTCCAGTGGAATGGACAGTAGTGGCTCTTCAGGCTGGACTTCTGGAGTTACTCTTAAGGAGGTATCTCCAGCTTCGGTGCAGTCTTCACACGTTCCAGCTGCTACTGGGACCCAAGGGCATGTCCACCCAACTGTTAAACCTGAAATTTCATCTGTACCACAAGCAGTAGCTTCTGAAAATGTTACAAAGGATGGAGGACATGTTGCGCCTTCTATCCCCGTTTCTCAAGCAGATGTGGTGATCCCTGATCTTCCTCCAATAACACAGATGGTGACAGGAAATATTCTTGATATTCCCGAAGAAAATTATATGGCAACTGAGACGGATGAGGGATATATGGATCCTTCATTGGGCGCTGCTGGGTCATTTCCCATTGATTTTGAAGTCATTTCACCTGATAACATTGATGATTTGTTAGGAAATCCTTCTATTTGGGATGAAATTTTGCAAACTCCAGTTCCAGAGGATATCGAGACCAATATTGCGGATGTATCCAACGGGAATGAGGTCCAGCCAACAGAAAATGGATGGAACAAAACTCAACGTATGGATCACCTTACAGAGCAGATGGGTCTTCTTTCTTCTGATACAAAACGAGTATGA 1473 0.4569 MDSGGSAPAAPISNANAPPPFLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRNITRRKPAHGQNHQQAQQPHGQSSSLGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQTTDNQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNKRITEVNKKRRLKREGNAETECTANPDGRIVKYQPLVNEAAKAILKQIMKWDTSRVESFNKNPDDYMIGDASSSSSGMDSSGSSGWTSGVTLKEVSPASVQSSHVPAATGTQGHVHPTVKPEISSVPQAVASENVTKDGGHVAPSIPVSQADVVIPDLPPITQMVTGNILDIPEENYMATETDEGYMDPSLGAAGSFPIDFEVISPDNIDDLLGNPSIWDEILQTPVPEDIETNIADVSNGNEVQPTENGWNKTQRMDHLTEQMGLLSSDTKRV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00523 490 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00523 490 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00523 490 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00523 490 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00523 490 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00523 490 SUPERFAMILY "Winged helix" DNA-binding domain 16 110 IPR036390 -
Phco4g00523 490 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 286 IPR027725 -
Phco4g00523 490 FunFam Heat shock transcription factor 1 14 111 - -
Phco4g00523 490 Gene3D - 13 111 IPR036388 -
Phco4g00523 490 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00523 490 Coils Coil 139 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00523 Phco-Chr4 3769253 3772784 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco4g00523 HSF_DNA-bind 1.8e-33 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00523 4 3769253 3772784 Phco4g00523 4 3769253 3772784 ECH