Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00517 ATGGGTAGATCACCGTGTCATGAAGAGATTAGGGGTGTAAAGAAAGGACCATGGACACCAGAAGAAGATGAGAAGCTGATTGATTATATCAGTAAACACTGCCATGGTAGTTGGAGAACACTTCCAAAGCGTGCAGGGCTCAATAGATGTGGTAAGAGCTGCAGATTAAGGTGGACAAACTATCTGAGGCCTGATATCAAGAGAGGCCAATTCACTGAAGAAGATGAGAGAACTATCATCAACCTTCATTCAATTCTCGGAAACAAGTGGTCGAAGATTGCAGCTCATCTGCCAGGACGAACTGATAATGAGATCAAGAATTATTGGAACACTCACATAAGGAAAAAGCTTCTAAAGATGGGTATTGATCCAGAAACTCACAAGCCAAGGACAGACTTGAATCACCTCATGAGTCTTTCTCAGTTGCTTGGCATGTCAAACTTGAGCAGTGTTACGAGTACAACTTGGGGCAGTAACCATCTTGGTGTACAACTAGATATCACTCAGCTAGCCAAAATACAACTGCTGCAAAATCTTTTGCAACTTATGAACAGCAATTCATTTGTTAACACGGGTAACCCTTACCTCTTAGGCAATCCCAACCTCAACCCTTCATTTCTGAACGGCACAAACCCCCTCCAAACTAAGGAGCCTGTGGTGTTGAGTGATAATGAAAGATTTGTTAACCCTAGTGTGTACTCTCAAGCACAAAGTGAGTGCTCTCAGCAGCAGGATGTTTCAAAATCATTGGCATATGCGGAGGGTGGATACATTCCACAAGATCTTGATTACAACAAAATTAGCAGCACTAATCATTCACGTGAAAATCAAGAAGAAAACCCTCTTCCTGCATTAGTTTCTGCCTCCCCGAGGATGGGAACCTTCAACCAAATGGACAGTTGTGGTAACTTGGCACAAACGAGCACAGAGTCACCTTCCAACACATTCTTTGATGATTGGGAGAAGTTGCTTGATGATGAAAGAAGCGATTCCTATTGGAAAGAGATTCTAGACTTTACATCCACTTCTGCGTCACCGATTATATGGTAG 1050 0.4267 MGRSPCHEEIRGVKKGPWTPEEDEKLIDYISKHCHGSWRTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGQFTEEDERTIINLHSILGNKWSKIAAHLPGRTDNEIKNYWNTHIRKKLLKMGIDPETHKPRTDLNHLMSLSQLLGMSNLSSVTSTTWGSNHLGVQLDITQLAKIQLLQNLLQLMNSNSFVNTGNPYLLGNPNLNPSFLNGTNPLQTKEPVVLSDNERFVNPSVYSQAQSECSQQQDVSKSLAYAEGGYIPQDLDYNKISSTNHSRENQEENPLPALVSASPRMGTFNQMDSCGNLAQTSTESPSNTFFDDWEKLLDDERSDSYWKEILDFTSTSASPIIW 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00517 349 SMART sant 14 64 IPR001005 -
Phco4g00517 349 SMART sant 67 115 IPR001005 -
Phco4g00517 349 FunFam Transcription factor MYB39 70 131 - -
Phco4g00517 349 CDD SANT 71 113 IPR001005 -
Phco4g00517 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Phco4g00517 349 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Phco4g00517 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 266 - -
Phco4g00517 349 FunFam MYB-related transcription factor 14 67 - -
Phco4g00517 349 MobiDBLite consensus disorder prediction 263 283 - -
Phco4g00517 349 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Phco4g00517 349 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Phco4g00517 349 Gene3D - 69 136 - -
Phco4g00517 349 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Phco4g00517 349 MobiDBLite consensus disorder prediction 296 315 - -
Phco4g00517 349 MobiDBLite consensus disorder prediction 263 289 - -
Phco4g00517 349 Gene3D - 13 68 - -
Phco4g00517 349 CDD SANT 17 62 IPR001005 -
Phco4g00517 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Phco4g00517 349 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00517 Phco-Chr4 3707605 3709419 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco4g00517 Myb_DNA-binding 7.7e-15 CL0123