Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00495 ATGAATCTCTGGACGGACGATAATTCCTCTGTTATGGAGGCTTTCATGTCTTCCCCCGATCTCTCATCCATATGGCCACCTCCGGCACCGCCGCAATCCGCCGCCGTCTTCAACCAGGACACGCTCCAGCACCGCCTCCAGGCTCTCATCGAGGGCGCCAGGGAGAGCTGGACCTACGCCATCTTTTGGCAGCACTCCTACGACTATTCCGGCTCCGCTCTCCTCGGCTGGGGCGACGGTTACTACAAAGGCGACGATGACAAAGCCAAGGCCAAGGCCAAAGCTAAAGCCACCTCCGTCGCCGAGCAGGACCACCGCAAGAAGGTCCTCCGCGAGCTCAACTCCCTCATCTCCGGCTCTTCCGCCGCCTCCTCCGACGACGTAGACGAGGAGGTAACTGACACCGAGTGGTTCTTCCTCGTCTCCATGACTCAGTCCTTCGTCAACGGCGCCGGCTTGCCCGGTCAGGCCTTCTTCAACTCCAACCCCGTTTGGGTCACCGGCGGCGACCGCCTCTCCGCCTCCCCCTGCGAGAGAGCCCGCCAGGGGCAAGTCTTCGGCCTCCAAACCCTAGTCTGCATACCGTCGGCAAACGGCGTCGTTGAGCTGGGGTCTACTGAGTTAATTTACCAGAACTCGGATCTGATGAACAAGGTCAAGGTTCTCTTCAATTTTAGCAACAACAACTTCGATATGGGTTCTTCTTGGCCTGCTACCAGCGCCGATCAAGGAGAAAACGACCCCTCCACGCTCTGGCTCAACGATCCTGAAGTTAGGGATTCCATTAACACTGCCGCAGCTACCCCTTCTGTATCCGTTTCGGTTCCCCCTCATAACAGTACTCACGGAATTTCAAAGACGATCCAGTTGGAAAGTTCTATTCAAACCCCTGGTTCCAGTACCTTAACTGAAACCCCAAGCTCTATCCACGCTGTTCCACAGAACCAGAGCGTGTTCTCCAGAGAATTGAACTTCTCTGAGTACGGTTTTGACCCCAAGAGTGGCAACACTCACAATCAGCATTCCCTGAAGCCCGAATCCTGCGAGATTCTCAGCTTCAGCGACAGCAAGAGAACCTCTTACGGCGGCGGCGGCGGTGTCAATGGTAATTCCAATTCCAATTCAAATTTCTTCTCTGGTCAATCACCGTTTGTTGCTGTTGCGGATGAGAACAACAATAACAACGGGAAGAGACGGTCGCCGAATTCGCGAGGCAGCAACGACGACGGAATGCTTTCGTTCACCTCCCGCGCGATTCTTCCGACCACTGATTTGAAGTCTGCCGGCGGAGGCGATTCCGACCACTCGGATCTGGAAGCGTCGGTGGTGAAGGACCCTGTGGTGGAGCCGGAGAAGCGGCCCCGGAAGAGAGGGCGGAAGCCAGCGAACGGAAGAGAGGAGCCGTTGAATCACGTTGAAGCGGAGAGGCAGAGGAGGGAGAAGCTGAATCAGAGATTCTACGCGCTTCGTGCTGTGGTTCCCAACGTGTCCAAGATGGACAAAGCGTCGCTTCTGGGTGACGCCATATCTTACATCACGGAGCTGAAGTCCAAGCTTCAAAACCTAGAATCAGATAAAGATGGATTGCAGAAGCAACTTGAAGGAGTGAAGAAGGAACTCGAGAAATCAGGCGACAACGTTTCTTCTAATCATACGAAACACGGGGGTAATAGTAACATTAAGTCGTCGAATCAGGCGTTGATTGACTTGGACATCGACGTGAAGATTATTGGGTGGGACGCAATGATAAGGATCCAATGCAGCAAGAAGAACCACCCCGCAGCGAGGTTGATGGCGGCGCTGATGGAGTTGGACTTGGACGTGCACCACGCCAGCGTATCGGTGGTTAACGATTTGATGATCCAACAAGCGACGGTGAAGATGGGGAGTAGGTTTTACACGCAGGAGCAGCTTCGTTCGGCCCTGTCGCTTAAGGTTGGGGATGTACGATGA 1953 0.5463 MNLWTDDNSSVMEAFMSSPDLSSIWPPPAPPQSAAVFNQDTLQHRLQALIEGARESWTYAIFWQHSYDYSGSALLGWGDGYYKGDDDKAKAKAKAKATSVAEQDHRKKVLRELNSLISGSSAASSDDVDEEVTDTEWFFLVSMTQSFVNGAGLPGQAFFNSNPVWVTGGDRLSASPCERARQGQVFGLQTLVCIPSANGVVELGSTELIYQNSDLMNKVKVLFNFSNNNFDMGSSWPATSADQGENDPSTLWLNDPEVRDSINTAAATPSVSVSVPPHNSTHGISKTIQLESSIQTPGSSTLTETPSSIHAVPQNQSVFSRELNFSEYGFDPKSGNTHNQHSLKPESCEILSFSDSKRTSYGGGGGVNGNSNSNSNFFSGQSPFVAVADENNNNNGKRRSPNSRGSNDDGMLSFTSRAILPTTDLKSAGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQNLESDKDGLQKQLEGVKKELEKSGDNVSSNHTKHGGNSNIKSSNQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALSLKVGDVR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00495 650 FunFam Transcription factor bHLH13 459 533 - -
Phco4g00495 650 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 466 515 IPR011598 GO:0046983
Phco4g00495 650 Gene3D - 458 545 IPR036638 GO:0046983
Phco4g00495 650 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 469 535 IPR036638 GO:0046983
Phco4g00495 650 CDD bHLH_AtAIB_like 463 539 - -
Phco4g00495 650 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 223 IPR025610 -
Phco4g00495 650 SMART finulus 472 521 IPR011598 GO:0046983
Phco4g00495 650 Coils Coil 512 546 - -
Phco4g00495 650 Pfam Helix-loop-helix DNA-binding domain 470 515 IPR011598 GO:0046983
Phco4g00495 650 MobiDBLite consensus disorder prediction 360 476 - -
Phco4g00495 650 PANTHER MYC 21 643 IPR045084 GO:0003700|GO:0006355
Phco4g00495 650 MobiDBLite consensus disorder prediction 360 422 - -
Phco4g00495 650 MobiDBLite consensus disorder prediction 538 560 - -
Phco4g00495 650 MobiDBLite consensus disorder prediction 430 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00495 Phco-Chr4 3529677 3531629 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g00495 bHLH-MYC_N 9.8e-56 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00495 4 3529677 3531629 Phco4g00495 4 3529677 3531629 ECH