Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00478 ATGCAAAATCTGGGCATGGTGGTCCTCTGCACATTAACTGCACATCAATTAATGATCATCAGATACGACCCAATGCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATTACAGGGCTAGCAGCCAACAAAATACAAAAAAATTGCCATTACATTTACGCAATACTATTGAACAATCAGTGGGGGGACCTAGTGACAATTCTGGCTACAAGGACAGAGAGAAGGGAAGGGAATAGAGAAAGAGTGAGTGTGTCTGAGAGAAAAAATAACAGCACAAAGATGGAGCTTTCTCAACTTGGTTTTCTTGATGAGCTGCTTGCTCCAAGAAGAGACACTTGGGGTGCTTTGTCCACTGGGTTGAATGAGTTACTCCCTTGTGGTTGGAGCTTTGACTCTTTTGATGAGAACCAGGGTTTAGCCACTTTGAATCCCTCATTTGCTGCATTTTCAACACCACTAGACCACAGGTTTGAATGTCCTTATGGAAGTGAAGCAGCTTACCCTTTTGTAGATGAGTTCACATTGCCAGAGCTTGATTCATCATACACCATAAATGATGAGTCGGCACCACTTTTGCCAAAAGAAGATAACCCATCATTGGAGGATGAAGAGCTTGGCTTTCTGGGAAGTGATAACCAAAGTTTGGAACATGCAAAAAATGGCTGCAAAATTGAGGAACAAGTGACAGAGATTCCAGTCTTCAACATGGGTTTGTGTGCAGAGAAAAAGCTCAAATCCAAAAAGCTAGAAGGGCAGCCCTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACCGTCTTTCCATGCTAAGGTCAATAGTCCCCAAGATTAGCAAGATGGACAGGACCTCCATTCTCGGAGACACCATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGTAAGTTGCAAGAAGAAGAAACGGAGGAGGGAACAAATCAGATAAACCTCTTGGGCATTTGTAAGGAGCTAAAGCCGAATGAAGTAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGAAGAGAGCAGGACACAAGGATTAGCATCTGCTGTGCCACAAAGCCGGGATTACTCCTGTCCACAGTGAACACCCTTGAAGCATTAGGCCTTGAGATTCATCAATGTGTTATAACCAGTTTCAATGATTTTTCAATGCAAGCATCCTGCTCTGAGGCAGCTGAGCAGAGAAATTGTACGAGCCCGGAAGAGATAAAGCAAGCACTATTCCGAAATGCAGGTTATGGTGGGAGATGTCTGTAG 1281 0.4301 MQNLGMVVLCTLTAHQLMIIRYDPMLLLLLLLLLLLLLITGLAANKIQKNCHYIYAILLNNQWGDLVTILATRTERREGNRERVSVSERKNNSTKMELSQLGFLDELLAPRRDTWGALSTGLNELLPCGWSFDSFDENQGLATLNPSFAAFSTPLDHRFECPYGSEAAYPFVDEFTLPELDSSYTINDESAPLLPKEDNPSLEDEELGFLGSDNQSLEHAKNGCKIEEQVTEIPVFNMGLCAEKKLKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEETEEGTNQINLLGICKELKPNEVMVRNSPKFDVERREQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVITSFNDFSMQASCSEAAEQRNCTSPEEIKQALFRNAGYGGRCL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00478 426 Gene3D - 261 333 IPR036638 GO:0046983
Phco4g00478 426 Pfam Helix-loop-helix DNA-binding domain 259 302 IPR011598 GO:0046983
Phco4g00478 426 SMART finulus 259 308 IPR011598 GO:0046983
Phco4g00478 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 256 315 IPR036638 GO:0046983
Phco4g00478 426 CDD ACT_UUR-ACR-like 352 393 - -
Phco4g00478 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 253 302 IPR011598 GO:0046983
Phco4g00478 426 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 190 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00478 Phco-Chr4 3359838 3363209 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g00478 HLH 1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00478 4 3359838 3363209 Phco8g00134 8 1200858 1202202 PCT