Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00466 ATGGGAAGGGGGAAGATTGTGATTGAAAGGATCGACAATTCCACCAGCCGGCAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCCAAAGAGCTTGCAATCCTCTGTGATGCACAAGTTGGCCTTCTGATATTCTCCAGCACGGGGAAGCTTTACGAGTATGCCAGCACCAGCGTGAAATCTATGATTGAGAGATACAACACATGCAAGGAAGAACAACACCATCTGATAAATCCAGAATCCGAAGTCAAGTTTTGGCAGAGGGAGGCAGAGATTCTAAGGCAACAACTACAGATTCTACAAGAAAACCATCGGCAATTGATGGGAGAACAACTTTATGGTCTGAGTGTCAGAAACCTACAAGATCTAGAGAATCAACTGGAAATGAGCCTCCAAGGTGTCCGTGTAAAAAAGGAACAAATTCTAAAAGATGAAATCCAAGAGCTGAACCGAAAGGGAAACCTTATCTTCCAGGAAAATGTGGAACTTTACAAGAAGGTAAACCTCATTCACCAATACCACACACTAATATGCATAAAAGTCTATGGTACAACAGATACAGCCACAACAAGCAGAAATGCATTTGATCCATTTCCATATGGTATGCATGCAGGAGGGTATTCACAAGAATTAGTCCAACTTCAGTTATGCCAGCCTGAACAAGAAGCTTATGAGACATCAGACACTGCCACAAAATAA 708 0.4209 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLLIFSSTGKLYEYASTSVKSMIERYNTCKEEQHHLINPESEVKFWQREAEILRQQLQILQENHRQLMGEQLYGLSVRNLQDLENQLEMSLQGVRVKKEQILKDEIQELNRKGNLIFQENVELYKKVNLIHQYHTLICIKVYGTTDTATTSRNAFDPFPYGMHAGGYSQELVQLQLCQPEQEAYETSDTATK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00466 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco4g00466 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco4g00466 235 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Phco4g00466 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco4g00466 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco4g00466 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco4g00466 235 Coils Coil 86 113 - -
Phco4g00466 235 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco4g00466 235 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Phco4g00466 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Phco4g00466 235 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco4g00466 235 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Phco4g00466 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phco4g00466 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00466 Phco-Chr4 3262231 3272457 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco4g00466 K-box 1e-23 No_clan