Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00454 ATGTCACCCGATGACATACCACCTTCAAAGCCAGCCACAACAACAGACCAAGAGACTCAAAGTTCAGGTGGCAGAAAAGGCTCCTCCACAAGGCCCCATGAGCAAGGCCTGAAGTGTCCACGATGCGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACACAACCAAGGCATTTCTGCAAGACATGTAGAAGATACTGGACAAAAGGTGGGGCGTTGCGTAACGTCCCTATTGGCGGTGGATGCAGGAAGAACAAGAAGGTGAGGTCATCAAGGCTTTCATGTGACTCCAAGGACTCTGGTTCCTCCTCTTCAGACCTTGGTGGCCTCAAGTTCCTTCATGCTCTTCCTCCTTCCATGGACTTTCACCTTGGGGGGTTACCCTTCCCAAGGCTTCACCATCACCCTCCAGCAACTTATAACCAATTTTCCTCTTTTGGGGACACTTCTAGTGCTTCTTCCTGTTTCAACCTTGACCCTTCTCCTGGCACCACCTCAAGTTCTTTCGCTGCTCTTAATTACCCCTTCTCTTACAATGGTGCAATCCAAGGTATGAGCGCTATGAATGTTCACAGTGGTCACTCTTCTTCCATTGAGTCTTTGAGTTCTATAAACCACGACTTGCACTGGAAGCTACAGCAGCAGCGATTGGCAATGCTGTTTGGTGGAGATAACAACCAGAAAGATCATAGTGGTAGTGGTGGGGTGTCATCAGCGGCTAACCATCTTGAGAACCAGACACAGAAACCACAACCCATTTTGTTTCGAAATCTTGAGGTTTCAAAGGCAGGGATTTTCCCCGTTGAGAACTGTAGAAAAGAACATGGTCCAAGTGGGGACACACACACACCCTCCACTGAGTGGTTCTTTGGGAATTCTTATGCCTCGGTGACTCCTACTCCTACTGCTACTACTACCAGTAGTGGTGGCCCAGGGAATGATAATGCAAGCAATTGGAGTAGCGGTGTCAATGCTTGGGGCGATGTGCCGCAGCAATATACTGCTTTGCCCTAG 1026 0.4893 MSPDDIPPSKPATTTDQETQSSGGRKGSSTRPHEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVRSSRLSCDSKDSGSSSSDLGGLKFLHALPPSMDFHLGGLPFPRLHHHPPATYNQFSSFGDTSSASSCFNLDPSPGTTSSSFAALNYPFSYNGAIQGMSAMNVHSGHSSSIESLSSINHDLHWKLQQQRLAMLFGGDNNQKDHSGSGGVSSAANHLENQTQKPQPILFRNLEVSKAGIFPVENCRKEHGPSGDTHTPSTEWFFGNSYASVTPTPTATTTSSGGPGNDNASNWSSGVNAWGDVPQQYTALP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00454 341 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Phco4g00454 341 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 222 IPR045174 GO:0003700|GO:0006355
Phco4g00454 341 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Phco4g00454 341 MobiDBLite consensus disorder prediction 303 341 - -
Phco4g00454 341 MobiDBLite consensus disorder prediction 1 39 - -
Phco4g00454 341 MobiDBLite consensus disorder prediction 7 29 - -
Phco4g00454 341 MobiDBLite consensus disorder prediction 303 332 - -
Phco4g00454 341 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00454 Phco-Chr4 3145174 3146199 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco4g00454 zf-Dof 1.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00454 4 3145174 3146199 Phco8g00118 8 1068038 1069123 PCT