Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00443 ATGGCATTCTCGCGTAATCACGCGAAAGAGTTTATGAGCGATGGCGAGGGATCGCCGAGGGCGATTCTGGAAACCCCTGTTTCGGAGACAGAGTCTGAGACAGAGTCATCGTTGGATAGCGGAAAAGAGGGTTACACGCTGCCATGGAAGTCTATGGTCGACGTTTTCAAGTTCAAGTCTGTGCGAAAATTAACGTCCATTCCTCTGCTTTCGGTGAGCCATGATATCTCTCGGAAGGGTTTGACCAAAAAACTTGCTCGTATTCGAAGTGCCGAAGAGGGTATTGATATTGGCGGTATTCCCGCGAAACCCTCCTGGAGAAACTTTGATTATGAAGAGTTAGCAGCTGCTACTAACGATTTTAGTTCTGAGAACTTGGTTGGGAAAGGTGGTCATGCTGAAGTGTACAGAGGAAACTTACCTGATGGTCAAGTTATAGCTGTAAAGAGGCTAATGAAGAATGAAAAGGATGCTGCAGATAGAGCTGGTGATTTTTTGACAGAGCTTGGGATTATTGCACACATAAACCACACAAATGCAACACACCTTGTTGGGTTTGGGGTTGATGGGGGCCTCTTCTTTGTCCTACAATTAGCTCCGCATGGAAGTCTTAGTTCTTTGCTTTTCGATTCTGAAGGCCTGGACTGGGGAAAACGATTCAAGATAGCTATTGGAGTGGCTGATGGATTGCGTTATCTTCATAAAGAGTGCCCAAGGCGAATCATTCATAGGGACATCAAGGCCTCCAACATATTACTAAACGAAAATTATGAAGCTGAGATTTCAGATTTTGGACTGGCCAAGTGGCTTCCAAATAAGTGGGCCAACCATGTTGTCTTCCCAATAGAAGGCACATTTGGCTATTTAGCTCCGGAGTATTTTATGCATGGAATTGTGGATGAGAGAACTGATGTATTTGCATTTGGAGTTTTGCTGTTGGAGCTCATAACAGGCCGTCGTGCTGTTGATTCAGATAGCAGGCAAAGTCTCGTCACCTGGGCCAAGCCACTGCTGGACACAAACAATGTAAAGGACATTGCAGACCCCAGATTAGGAGAGGAATATGATCATCAAGAAATGCTGCGAGTCATGGTGACAGCTTCCATGTGTGTCCACCATGCATCCTCCAAGCGGCCATTCATGAACAAGGTTGTGCAGCTGCTAAACGGCGAAGAGTCAATTATAGACCTTAAGCAAAATTCAAGTGCACCAAAATCTCAATTGTTAGAGGCATGTGACCTAGAAGATTATACTTGCTCAAGTTACCTGAAGGACATGAGTCGCCACATGCAACTGATCATGGAGTGA 1308 0.4526 MAFSRNHAKEFMSDGEGSPRAILETPVSETESETESSLDSGKEGYTLPWKSMVDVFKFKSVRKLTSIPLLSVSHDISRKGLTKKLARIRSAEEGIDIGGIPAKPSWRNFDYEELAAATNDFSSENLVGKGGHAEVYRGNLPDGQVIAVKRLMKNEKDAADRAGDFLTELGIIAHINHTNATHLVGFGVDGGLFFVLQLAPHGSLSSLLFDSEGLDWGKRFKIAIGVADGLRYLHKECPRRIIHRDIKASNILLNENYEAEISDFGLAKWLPNKWANHVVFPIEGTFGYLAPEYFMHGIVDERTDVFAFGVLLLELITGRRAVDSDSRQSLVTWAKPLLDTNNVKDIADPRLGEEYDHQEMLRVMVTASMCVHHASSKRPFMNKVVQLLNGEESIIDLKQNSSAPKSQLLEACDLEDYTCSSYLKDMSRHMQLIME 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00443 435 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 96 198 - -
Phco4g00443 435 Gene3D Phosphorylase Kinase; domain 1 100 196 - -
Phco4g00443 435 Gene3D Transferase(Phosphotransferase) domain 1 200 408 - -
Phco4g00443 435 MobiDBLite consensus disorder prediction 1 41 - -
Phco4g00443 435 Pfam Protein tyrosine and serine/threonine kinase 124 388 IPR001245 GO:0004672|GO:0006468
Phco4g00443 435 ProSitePatterns Protein kinases ATP-binding region signature. 127 149 IPR017441 GO:0005524
Phco4g00443 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Phco4g00443 435 PANTHER OS08G0249100 PROTEIN 29 414 IPR046958 -
Phco4g00443 435 SMART serkin_6 121 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00443 435 ProSiteProfiles Protein kinase domain profile. 121 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00443 435 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 200 402 - -
Phco4g00443 435 SUPERFAMILY Protein kinase-like (PK-like) 105 390 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00443 Phco-Chr4 3081252 3085126 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Phco4g00443 PK_Tyr_Ser-Thr 5.4e-36 CL0016