Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00441 ATGGATGCAATCCAAACAGAGAAAGTCTATGTTGCTGTTGGTAATGATGCACAGGATGGATTTAAGACTTTGAATTGGGCTCTCAAGAAATGGAATTATCATCCAATTTCCATTGTTATTCTCCATGTCACACACAGCACTCCCATGGATTGTGTCAACACACCATTTGGGAAACTTCCAGCAAGATCTGTGAGTGAGGAGAAACTACAAATTCTCAGGAAAGATGAGCAAGAGAAAATCAACAAGTTACTTTCCAAGTATGTTGCTTTCTGTGGAAAGGTGCCAGCAGAGATTCTTGAAGTTGAGAAATCGGATGAGCCAATGCAAAAGCGAGTCATAGACTTGATCTTTGGTCTAGGAATAACAAAATTGGTCATGGGATTTTCATTCATGAAGCCCTCCATGAAATCTAAAGGTGCTATTAGTGGATTGTTCTATGTTCATCAGCACAAGCCATCCTTCTGTGAATTGTTCATTATTTGTGGGGGGAAGCAAATTTTCCTGAGTGGAAAAAATGATGAGAAAATCATGGAGGATGATCAAGGAGTCATGGTTGCAAGAATAAGAGATAAGATAACCTTCAAAGATTGGTTAGATAAATGGTTTCATGACAAAACCAACGATTCTCTTGATAAAAGTGAATCACTTTCCTCAAGCAATTTGGAGTCCCCAGTGAACAGAAACCTGTGGGAATTTTACCTGCAGGAAATTGAAAATTACTATCAAGAATTGTTATCTTCCAAGTTGGAGAAAGGAAACTGCGGGCTAGACAATGACGAGTCACAGATTGGTCCAAATGAGCCACATGTCACTGAACAAAACAATTATAATTTGAGTGGTGCAGAGAAAATTGAGATTCTGAAAAGTAAGCTGAATGAAGCTCAGAAGACGATCCTATTGAAGAGGAAAGAGGCGAAAGATAGTAAAGAGAGGCACGCAAAAGCTGAATGGGCAATTTGTCTATGCAACAGTCGAGCTGAAGAAGTGGAAGGTCGAATTCGAGAAGAGGTGAGTGCTAAGGAGGAGCTACGGAAGGAATGGGAAGCGGAGAGAGAGCAGATAGAGGAGATGAGAATGGAAGTGGAAGAGAGGAGGAGGAGGCTCAGTTCCCTGAAAGAGGTGCAATCGGAGCTCTCCAACAGGCTTCAAATATGGACACTAACCAAGACGCGAGCGGAGACGCAGCTCGAGAGGGCGGTAGGGGAGAGAAGGGAGATGCTGAGGGAGATCGAGGAGCTCAGGCGCCAGAGAGACGTGCTCAACCGAAGGATCGAGTTCTGCAAGCAGAAGGACGCCATTGGAATGGCCGCTAGGCTCGCCGACACGTGCTGCACCTTCCGCGAGTACACGGCGGAGGAGGTCCGGCTGGCCACCGACAACTTCTCCGATCGGCTGAGGTTGAAGTCCGGCGGAGATTGGAGCAATGTGTACCGAGGACGCTTCAACCACTCCACTGTTGCCATCAAGATGCTCCCTTCTTTCTCCCTCCAAGATTTCCAATCCAAGGTGAGGGTTCTTGGTGATATTAGGCATCCTCATCTGATTGCTATGGTGGGGTTTTGCTCCGAGCCCAAGTGCATAGTTTTGGAATACATGCGCAACGGAAGCTTAACAGACATGCTGTTTTCTAGGAGAAAAAACCGCGCCTTAAGATGGCACGACCGAATACGAATTGCCTCAGAAGTTTGTTCGGGCCTGGGCTTTCTCAATGCAGCAGAGCCAAGGCCTGTTATTCACTGCCATTTGACCCCACACAAAGTACTCCTAGACCGCAATTTGGTTGCAAAGATCACGTGCATTGGGCTCCATGATTGCAGTGACGAACAGTGTAACGTTGAATCAGATTTGCGGGCTGTAGGGGTTTTGTTAATGCATCTTTTGACAGGAAGAAATTGGGCTGGGCTCATGGAGGAGGTGATGACAGTGGATATGGGTAGAGAGGCTTTGGGTAGCGTTCTTGATGAGATGGCTGGGCAATGGCCAGCAGATCTAGCAAAAGAACTTGCAGGCCTGGCTTTTAGGTGTATGTCCACCAAAAGCAAGCCCAACTCAGAACTGAGCATTGCAAAGGTCTTGGAGGAACTGAATGAGATAAGGAGAAAGGGAGATGAAATAGTTGGAAGGGAAGGACGAAAGGCAATTATTGGTGGGTTTATAGATAGAGAGGGATCCAGTGATGTGCCTAGTGTTTTTCTTTGCCCCATACTTCAGGAGGTAATGAAAAACCCACACTTGGCAGCAGATGGGTTTTCTTATGAGCTTGAAGCAATAGATCACTGGCTGCAATCGGGGCGTGACACATCACCAATGACAAATTTGAGGCTGAAACACACATTCCTCACCCCGAATCACACTCTCCGTTCCCTCATTCAGGATTGGCAGACCAACAAATCACCCAAACTTACACACTAA 2412 0.4602 MDAIQTEKVYVAVGNDAQDGFKTLNWALKKWNYHPISIVILHVTHSTPMDCVNTPFGKLPARSVSEEKLQILRKDEQEKINKLLSKYVAFCGKVPAEILEVEKSDEPMQKRVIDLIFGLGITKLVMGFSFMKPSMKSKGAISGLFYVHQHKPSFCELFIICGGKQIFLSGKNDEKIMEDDQGVMVARIRDKITFKDWLDKWFHDKTNDSLDKSESLSSSNLESPVNRNLWEFYLQEIENYYQELLSSKLEKGNCGLDNDESQIGPNEPHVTEQNNYNLSGAEKIEILKSKLNEAQKTILLKRKEAKDSKERHAKAEWAICLCNSRAEEVEGRIREEVSAKEELRKEWEAEREQIEEMRMEVEERRRRLSSLKEVQSELSNRLQIWTLTKTRAETQLERAVGERREMLREIEELRRQRDVLNRRIEFCKQKDAIGMAARLADTCCTFREYTAEEVRLATDNFSDRLRLKSGGDWSNVYRGRFNHSTVAIKMLPSFSLQDFQSKVRVLGDIRHPHLIAMVGFCSEPKCIVLEYMRNGSLTDMLFSRRKNRALRWHDRIRIASEVCSGLGFLNAAEPRPVIHCHLTPHKVLLDRNLVAKITCIGLHDCSDEQCNVESDLRAVGVLLMHLLTGRNWAGLMEEVMTVDMGREALGSVLDEMAGQWPADLAKELAGLAFRCMSTKSKPNSELSIAKVLEELNEIRRKGDEIVGREGRKAIIGGFIDREGSSDVPSVFLCPILQEVMKNPHLAADGFSYELEAIDHWLQSGRDTSPMTNLRLKHTFLTPNHTLRSLIQDWQTNKSPKLTH 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00441 803 Pfam U-box domain 727 797 IPR003613 GO:0004842|GO:0016567
Phco4g00441 803 Coils Coil 389 430 - -
Phco4g00441 803 SUPERFAMILY RING/U-box 724 797 - -
Phco4g00441 803 SMART Ubox_2 730 793 IPR003613 GO:0004842|GO:0016567
Phco4g00441 803 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 725 801 IPR013083 -
Phco4g00441 803 ProSiteProfiles U-box domain profile. 726 800 IPR003613 GO:0004842|GO:0016567
Phco4g00441 803 Pfam Protein tyrosine and serine/threonine kinase 471 606 IPR001245 GO:0004672|GO:0006468
Phco4g00441 803 PANTHER OS02G0152300 PROTEIN 9 792 - -
Phco4g00441 803 Coils Coil 66 86 - -
Phco4g00441 803 SUPERFAMILY Protein kinase-like (PK-like) 446 678 IPR011009 -
Phco4g00441 803 CDD RING-Ubox_WDSUB1-like 728 783 - -
Phco4g00441 803 ProSiteProfiles Protein kinase domain profile. 462 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00441 803 Coils Coil 284 311 - -
Phco4g00441 803 Gene3D Transferase(Phosphotransferase) domain 1 447 705 - -
Phco4g00441 803 Coils Coil 326 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00441 Phco-Chr4 3049004 3052841 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Phco4g00441 PK_Tyr_Ser-Thr 1e-20 CL0016