Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00432 ATGGCGAGGGAGAAGATTCAGATTAGGAAGATCGACAACGCCACCGCCAGACAGGTTACGTTCTCCAAGCGTCGCAGAGGACTCTTCAAGAAAGCTGAGGAGCTTTCGGTTCTGTGCGATGCTGATGTTGCCCTCATAATCTTCTCTTCCACTGGGAAACTCTTTGAGTACTCCAACTCCAGCACGAAGGAGATACTTGAAAGGCATCATTTGCACTCAAAGAACCTAGCAAAGATGGATCAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAACTGCACCAGATTGAGCAAGGAAGTTGCCGAGAAGAGCCATCTACTCAGGCAGCTGAGAGGAGAGGATCTTCAGGGTCTGAACATTGAAGAATTGCAACAACTGGAGAGGTCTCTAGAAACTGGATTGAGCCGTGTAATAGAAAAGAAGGGCGAGAAAATTATGAACGAGATCACTGATCTCCAAAGAAAGGGGATGGCATTGATGGAAGAGAACGAGCGACTAAAACATCATGTGGCGGGCATAGTTAATGGTGAAAGGCGTGGTGGTGCCGAATCTGAGAACTTTGTTGTGGATGAAGGTCAGTCTTCAGAGTCTGTGACCTACGTTTGCAATTCCACTGGACCTCCCCAGGACTATGAAAGCTCAGATACGTCCCTCAAGTTGGGGAGAAGTGAGAAATTTAGTGTCTTGAAATGTGAGAATAATCAAGCTCCCATGATCCTCTTGAAATATGGACTAGGGTTAGGGTTTGGGAATTTGCGATGGATGGCTTCTGCAGTTGTAGATCTCCCTCTTGATCTGATCCTCCAAGAACACAGAAATCCTAGTAGTGTTCTTGCAGTTGACCCGAACTCCGATGACAGATATTTCTCACCCATGAGCCATGCTCTGTACGGAGTTTACTTGAAAACCCATTATCCACGCCCTGCATTATGGAATCCGTCACCAACAACTCCTCATGTCTTTTACTGA 972 0.465 MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSNSSTKEILERHHLHSKNLAKMDQPSLELQLVENSNCTRLSKEVAEKSHLLRQLRGEDLQGLNIEELQQLERSLETGLSRVIEKKGEKIMNEITDLQRKGMALMEENERLKHHVAGIVNGERRGGAESENFVVDEGQSSESVTYVCNSTGPPQDYESSDTSLKLGRSEKFSVLKCENNQAPMILLKYGLGLGFGNLRWMASAVVDLPLDLILQEHRNPSSVLAVDPNSDDRYFSPMSHALYGVYLKTHYPRPALWNPSPTTPHVFY 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00432 323 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco4g00432 323 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco4g00432 323 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco4g00432 323 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco4g00432 323 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Phco4g00432 323 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco4g00432 323 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
Phco4g00432 323 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco4g00432 323 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco4g00432 323 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Phco4g00432 323 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phco4g00432 323 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Phco4g00432 323 FunFam Transcription factor, MADS-box 13 83 - -
Phco4g00432 323 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00432 Phco-Chr4 2960371 2969118 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco4g00432 K-box 8.5e-17 No_clan