Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00428 ATGGAGGCAAATCAGTCAAAGTCCATGGTTTTCCTTTTACAGTTAGTACAGGGCATGCAACCGTTTCGAAGTTACTATAACTCAGAAGCTCAAATGATAAGAGGTGGCTTTCCTCAGCCATTCATCTCTAGGACATACAAAACCAGTTTCTTGAAGAAAAGATCAAATGCAGAGATCAAAGTTGTAGCCGCAAAAAAACATAGTGAAGCTGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCTCCGAACTATCCTCCCCAACTTGATCAAAAAGGACAAGGCATCAGTGTTGGCAGAGACTATAAAGCAAGTGAAGGAGCTGAAGAAAAAGGTATCGAAACTGGAGCAGGATAGTTGTGGTAACTCATCAAAGGATGTTGTTAAGTTTCCTAGTGGGGCAGACAGGTTGAACTTGGAAAGATGTAATGATGAGGAGGGCGTAGTGAAGGCCACATTGAGTTGCGAGGAGAGTCTGGGACTGATGTCTGCAATATCAAGGGCAATAGGGTCAGTGAAAAGCAAAGTGGTAAAGGCTGAGATAGTGAGTGTGGGTGGGAGAAACAGAAGTGTGTTGTGGGTGAAAGGTCTTGGAAAAGATCGTATGGGAATGCTCAAGAGCTCTTTGAAGATTGCCATGCACAAGCCGGCCTTTAAGATGCGCCGTTCTACTCACTAA 687 0.4352 MEANQSKSMVFLLQLVQGMQPFRSYYNSEAQMIRGGFPQPFISRTYKTSFLKKRSNAEIKVVAAKKHSEAEKRRRMRINGQYETLRTILPNLIKKDKASVLAETIKQVKELKKKVSKLEQDSCGNSSKDVVKFPSGADRLNLERCNDEEGVVKATLSCEESLGLMSAISRAIGSVKSKVVKAEIVSVGGRNRSVLWVKGLGKDRMGMLKSSLKIAMHKPAFKMRRSTH 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00428 228 Coils Coil 101 121 - -
Phco4g00428 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 111 IPR011598 GO:0046983
Phco4g00428 228 SMART finulus 68 117 IPR011598 GO:0046983
Phco4g00428 228 Pfam Helix-loop-helix DNA-binding domain 66 111 IPR011598 GO:0046983
Phco4g00428 228 PANTHER TRANSCRIPTION FACTOR BHLH30 46 220 IPR045847 GO:0003700|GO:0006355
Phco4g00428 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 121 IPR036638 GO:0046983
Phco4g00428 228 Gene3D - 62 129 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00428 Phco-Chr4 2898991 2901060 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco4g00428 HLH 5e-08 No_clan