Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00378 ATGAGAAGACACCGTGCTATTCATCTCTCTCATGCTCTACTGTGCACCGTTTTTTGTTGTCTTGTGACGGCTTCTGCAGTGACTGAGAAGGAAATTTTGCTTGAATTCAAAGGAAACATAACGGACGATCCACGCGCCAGCTTGAGTTCGTGGGTTTCAAGTGGGAACCCGTGCAACGATTACAAAGGTGTCTCGTGTAACTCTGAAGGGTTTGTGGAGAGAATCGTACTATGGAACACTAGCTTGGGAGGGGTGTTATCCTCGTCACTTTCGGGGTTGAAGAGATTGAGGATATTGACGTTGTTCGGGAACCGTTTCTCGGGTGATATTCCAGAAGGGTATGGTGATCTTCACTCACTGTGGAAGATCAATTTGAGTTCCAATGCTTTATCTGGTTCGATCCCTGAGTTCATCGGTGATTTGCCTAGCATTCGATTTCTAGATTTATCCAAGAATGGCTTCAGTGGGCAGATACCTTCGGCTTTGTTTCGGTACTGCTACAAAACAAAGTTCGTTTCTCTTTCTCATAACAACCTCGCCGGTTCAATTCCTGCCTCCTTGGTGAACTGCTCTAACCTTGAAGGGTTTGATTTTTCCTTCAACAACCTTAGCGGGGTTGTCCCTTCGCTGCTTTGTGGCATTCCAAGGTTGTCATATGTGTCGCTGAGAAGCAATGCCTTGTCAGGGAGCGTGCAGGAGCTCATTTCCTCATGCCAAAGTCTGGAACATTTGGATTTTGGAAGTAATAGATTCACTGATTTGGCTCCATTCAGTGTCCTTGGAATGCAAAATCTTACCTATTTCAATTTATCGTATAATGGGTTTGGGGGACATATTCCTGAGATCAGTACCTGTAGTGAGAGATTGCAAATCTTTGATGCTTCAGGGAATTTTTTGGATGGGGAGATTCCCTCCAGCATAACAAAATGCAAGAGCCTAAAGCTTTTGGCGTTGGAGTTGAATAGGCTGGAGGGGAATATCCCAGTGGATATTCAGGAACTGCGAGGACTAATAGTTATCAAATTGGGTAATAATTCCATTGGTGGAATGATCCCCGAGGGCTTTGGCAACGTTGAGCTTCTTGAATTGCTGGATTTGCACAATCTGAACCTCGTTGGCCAAATTCCTGATGATATAAGCAATTGCAAGTTTCTTCTTGGGCTGGACGTTTCTGGCAATAAATTAGAAGGTGAGATTCCTCAGACTCTCTACGACTTGACAAACCTGAAATCCCTTAACCTACATCATAACCAGCTTAATGGAAGCATCCCCCAAAGCCTTGGAAACCTATTAAGGATCCAATACCTAGATCTGTCACATAATTCACTTTCTGGCCCAATCCCTACTTCCCTTGGAAATTTAAATAACTTGACACATTTTGATCTCTCATTCAATAATCTGTCTGGTTTCATTCCTGAGATTGCAAACATACAGCGTTTTGGTGCATCTGCATTTTCCAATAATCCTTTTCTCTGCGGTCGTCCTTTGGACACCCCTTGCTTGGTAAACGGAGCTTCATCACCTTCATCTCATGGGAAGGCTAGAGTTCTAAGCACCTCAGCAATTGTCGCAATTGTCGCTGCAGCTGTAATTCTTGCTGGGGTTTGTTTGGTGACCATCATGAATATTATGGCACGTGATAGAGAAAAAGAAGAACCGATTATGATTGTTGAGAGCACACCACTTGGATCAACAGAATCAAATCTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAACATTGCTTGATAAAGAGTCTTTGATAGGTGGTGGATCAATTGGTACTGTCTACCGAACTGATTTTGAAAGCGGGATCTCAATTGCAGTGAAGAAGCTCGAGACTATGGGAAGGATCAGAAACCAGGAGGAATTTGAGCATGAAATTGGGAGACTAGGCAACCTTCAACACCCTAATTTAGTTGCTTTTCAAGGTTATTATTGGTCCTCTTCAATGCAGTTGATTCTGTCAGAGTTTGTCCCAAATGGGAATCTCTATGATAATCTACATGGGTTGGGCTATGCTGGAACCAGCACTAGTAGAGGAAATAGGGAATTATATTGGTCCAGAAGGTTTCAAATTGCAGTCGGAACCGCAAGAGCCCTTGCTTATCTCCACCATGACTGCAGACCTCCAATTCTTCATCTCAACATTAAATCCTCTAACATACTCCTAGATGACAACTACGAAGCTAAGTTGTCTGATTATGGATTAGGAAAGTTACTTCCGATTTTGGATAATTATGGTCTGACCAATTTCCACAATGCTGTGGGATATGTTGCACCAGAGTTGGCTCAAGGCCTGAGGCAGAGTGAGAAATGTGATGTTTACAGTTTTGGAGTCATTCTTTTGGAGCTGGTTACAGGGAGGAAGCCTGTGGAAAGTCCAACCACAAATGAGGTGGTGGTCTTGTGTGAATATGTAAGAGGTTTGTTAGAGACTAGCTCAGCTTCAGATTGCTTTGACAGAAATTTACTGGGCTTTACCGAGAACGAATTAATTCAGGTTATTAGATTGGGACTAATTTGTACTTCGGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGTCCTTGAATCCATTAGAAATGGATTGGATTCCCATTAA 2655 0.4298 MRRHRAIHLSHALLCTVFCCLVTASAVTEKEILLEFKGNITDDPRASLSSWVSSGNPCNDYKGVSCNSEGFVERIVLWNTSLGGVLSSSLSGLKRLRILTLFGNRFSGDIPEGYGDLHSLWKINLSSNALSGSIPEFIGDLPSIRFLDLSKNGFSGQIPSALFRYCYKTKFVSLSHNNLAGSIPASLVNCSNLEGFDFSFNNLSGVVPSLLCGIPRLSYVSLRSNALSGSVQELISSCQSLEHLDFGSNRFTDLAPFSVLGMQNLTYFNLSYNGFGGHIPEISTCSERLQIFDASGNFLDGEIPSSITKCKSLKLLALELNRLEGNIPVDIQELRGLIVIKLGNNSIGGMIPEGFGNVELLELLDLHNLNLVGQIPDDISNCKFLLGLDVSGNKLEGEIPQTLYDLTNLKSLNLHHNQLNGSIPQSLGNLLRIQYLDLSHNSLSGPIPTSLGNLNNLTHFDLSFNNLSGFIPEIANIQRFGASAFSNNPFLCGRPLDTPCLVNGASSPSSHGKARVLSTSAIVAIVAAAVILAGVCLVTIMNIMARDREKEEPIMIVESTPLGSTESNLIIGKLVLFSKSLPSKYEDWEAGTKTLLDKESLIGGGSIGTVYRTDFESGISIAVKKLETMGRIRNQEEFEHEIGRLGNLQHPNLVAFQGYYWSSSMQLILSEFVPNGNLYDNLHGLGYAGTSTSRGNRELYWSRRFQIAVGTARALAYLHHDCRPPILHLNIKSSNILLDDNYEAKLSDYGLGKLLPILDNYGLTNFHNAVGYVAPELAQGLRQSEKCDVYSFGVILLELVTGRKPVESPTTNEVVVLCEYVRGLLETSSASDCFDRNLLGFTENELIQVIRLGLICTSEDPLRRPSMAEVVQVLESIRNGLDSH 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00378 884 CDD STKc_IRAK 602 877 - -
Phco4g00378 884 Gene3D Phosphorylase Kinase; domain 1 567 672 - -
Phco4g00378 884 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 673 883 - -
Phco4g00378 884 FunFam Putative LRR receptor-like serine/threonine-protein kinase 573 672 - -
Phco4g00378 884 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 26 164 - -
Phco4g00378 884 SMART LRR_typ_2 141 165 IPR003591 -
Phco4g00378 884 SMART LRR_typ_2 238 261 IPR003591 -
Phco4g00378 884 SMART LRR_typ_2 334 357 IPR003591 -
Phco4g00378 884 SMART LRR_typ_2 454 476 IPR003591 -
Phco4g00378 884 SMART LRR_typ_2 406 430 IPR003591 -
Phco4g00378 884 Pfam Leucine rich repeat 388 443 IPR001611 GO:0005515
Phco4g00378 884 Pfam Leucine rich repeat 215 274 IPR001611 GO:0005515
Phco4g00378 884 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Phco4g00378 884 PANTHER OS05G0588300 PROTEIN 211 332 - -
Phco4g00378 884 Gene3D Ribonuclease Inhibitor 285 378 IPR032675 -
Phco4g00378 884 SUPERFAMILY Protein kinase-like (PK-like) 597 875 IPR011009 -
Phco4g00378 884 SUPERFAMILY L domain-like 164 492 - -
Phco4g00378 884 Gene3D Ribonuclease Inhibitor 382 497 IPR032675 -
Phco4g00378 884 ProSiteProfiles Leucine-rich repeat profile. 240 261 IPR001611 GO:0005515
Phco4g00378 884 ProSiteProfiles Leucine-rich repeat profile. 408 431 IPR001611 GO:0005515
Phco4g00378 884 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Phco4g00378 884 Pfam Protein kinase domain 598 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00378 884 Gene3D Transferase(Phosphotransferase) domain 1 673 883 - -
Phco4g00378 884 Gene3D Ribonuclease Inhibitor 26 284 IPR032675 -
Phco4g00378 884 SUPERFAMILY L domain-like 72 161 - -
Phco4g00378 884 ProSiteProfiles Protein kinase domain profile. 596 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00378 884 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 165 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00378 Phco-Chr4 2459462 2462200 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Phco4g00378 Pkinase 1.7e-35 CL0016