Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00341 ATGATGACGCCATTACCGGTGGAGCAAACCGGTGAATCAGCGCCGGCGGACTTGCAGAGATCAATTCCGACGCCGTTTCTGACCAAGACGTACCAGCTCGTGGACGATCCCTCCGCGGATGACCTAATTTCCTGGAACGAAGATGGCACGAGTTTCATCGTTTGGCGGCCCGCGGAATTCGCCCGTGATTTGCTTCCGAAGTACTTCAAACACAACAACTTTTCCAGTTTTGTCCGTCAGCTAAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGACTGTTTCCGACGAGGTGAGAAAACTCTGCTTCGCGACATACAACGCCGGAAAATACTACCGGTGCCTCCAACTGCGGCACCGTCATTAGTCACAGCCAATACTGTAACGGTGGCTGTGGCGGCACCGGCGATTAGAGCAGTGTCTCCAACGACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGGAAGTAATAATAATACAGTGCACCGCACCACGAGTTGCACTACTGCGCCCGAGCTGTTAGAAGAAAATGAACGGCTTAGAAAAGAGAACATGCAACTGAATCACGAGTTGAGTCAATTGAAGAGTTTGTGTAATAACATACTCGCTTTGATGACCAATTACGCTTCTGGTTTTAGCCGTCAGCAGTTAGAATCGTCCACTAGTGCTGTGAGGACAGTGCCGGTGCCGGAAGGGAAGGCTCTGGAGCTTTTGCCTGCGAAGCATGTTTCGTCGGCTGATGACGCCGTGCATGTCGGTGGCGCTGCCGGCTTCGTGCCATGTACGACGGCGAATGCGGCGGAGGCAGAGGTTCCCAAGCTGTTTGGGGTTTCTATTGGGTTGAAACGGTGTAGGACAGAGTGCGATGCGGATCAGGAGGGAGAAGAACAGAATCAAATGCACACGCTAGTACTAACGCAGGTACAGACACAGACACAATCATCGCAAGAACCAGATGGCGGGCCAGATGTGAAATCTGAGCCGCTTGATGGGGATGAGTCGGATGATCAGGATGGTCGCTGGCTGGAGCTTGGGAAATAA 1074 0.5242 MMTPLPVEQTGESAPADLQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKTLLRDIQRRKILPVPPTAAPSLVTANTVTVAVAAPAIRAVSPTTSGDEQVLSSNSSPIAGSNNNTVHRTTSCTTAPELLEENERLRKENMQLNHELSQLKSLCNNILALMTNYASGFSRQQLESSTSAVRTVPVPEGKALELLPAKHVSSADDAVHVGGAAGFVPCTTANAAEAEVPKLFGVSIGLKRCRTECDADQEGEEQNQMHTLVLTQVQTQTQSSQEPDGGPDVKSEPLDGDESDDQDGRWLELGK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00341 357 Coils Coil 181 208 - -
Phco4g00341 357 MobiDBLite consensus disorder prediction 318 357 - -
Phco4g00341 357 Gene3D - 19 116 IPR036388 -
Phco4g00341 357 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 317 IPR027725 -
Phco4g00341 357 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Phco4g00341 357 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00341 357 FunFam Heat stress transcription factor B-4 18 116 - -
Phco4g00341 357 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00341 357 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00341 357 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00341 357 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00341 357 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00341 357 MobiDBLite consensus disorder prediction 149 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00341 Phco-Chr4 2182014 2183177 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco4g00341 HSF_DNA-bind 7.1e-33 CL0123