Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00325 ATGAAGCCTCGTACTTCATTATGGTTTCTTTCGTTGATTTACACGCTCTCTCTTGTGGCTTCTGACACTGTGCCGTCAAATGAAGTTTGGGCGCTTAGAAGCTTCAAAGAAGCTGTTTATGAAGACCTATATCAAGTTTTGTCCAATTGGGATACGGTAGAAGCAGATCCTTGTAACTGGTTTGGCGTCACTTGCACTATGGTGCGAGATCATGTCATCAAGCTAAACATATCGGGATCATCATTGAAGGGGTTTCTTGCACCAGAGTTGGGGCAACTCACCTACTTGCAAGAACTAATTTTGCACGGAAACAATCTCATCGGAACAATACCTAGAGAGTTGAGCGAGTTGAAATATCTCAGGGTGTTTGATCTAGGAATGAATCAGTTAACAGGACCCATTCCTCCAGAGTTTGGAAATCTATCTCGAGTTGTGAAAATAAACTTGCAGTCCAACGGGTTGACTGGTAGGCTACCTCCAGAGCTTGGAAACTTGATATTCCTTCAAGAACTTCGGCTGGATAGGAATAGACTTCAAGGACCTATTCCTGCTGGCGATAGCTCAAATTTTGCTTCAAATATGCATGGGATGTATGCGTCGAAGGAGAATGCAACTGGCTTCTGTCGTTCGTCTCAGTTGAAAGTAGCAGACTTCTCATATAATTTTTTAGTTGGTAGTATACCCAAATGCTTGGAGTATCTTCCGAGGTTAAGCTTTCAAGGGAATTGCATCCAGAGCCAGGATTTAAAGCAGCGACCTTCTTTACAGTGTGCTGGTGCTTCTCCTGCCAGTGCCAAGAGCCAGCCAGTGGTGAATCCAAGTCACCAACCCGCTGAATATGTGTCCAAGCATCACGGAGCGTCAAAACCTGTTTGGCTTTTGGCTCTAGAAATAGTAACTGGGACTATGGTGGGCTCTCTCTTTCTGGTTGCTGTTCTTGCTGCTTTACAGAGATGTAACAAAAAATCATCTATCATCATTCCTTGGAAAAAATCTGGAAGCCAGAAAGATCATACGGCAGTATATATAGACCCTGAGATGTTGAAGGATGTGAGAAGGTATAGCAGACAAGAGCTTGAAGTGGCCTGTGAAGACTTCAGCAACATTATTGGGTCCTCACCAGACAGTGTGGTTTACAAGGGAACAATGAAAGGTGGGCCTGAGATTGCTGTAATTTCCCTCTGCATCAAGGAGGAGCATTGGACAGGATATCTTGAGCTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAAATCATGAGAATATAGGAAAACTACTTGGCTATTGTAGAGAGGACACTCCATTTACGAGGATGTTGGTTTTTGATTATGCTTCAAATGGGACACTTCATGATCACCTACATTGTTATGAAGAAGGATGTCAATTCTCTTGGACACGGCGTATGAAGATTGCCATAGGCATTGCACGCGGACTCAAGTATTTGCATACCGAAGTGGAGCCTCCATTTACTATCTCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCTAAGTTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAAGAATTCTGGTTCCATTGGCAGCCAAGGTGCTATCTGCGTCCTTCCAAACTCCCTTGAAGCACGCCATCTTGATACCGAAGGAAACATCTTTGCTTTTGGGGTACTTCTACTGGAGTTAATCAGCGGAAGACCTCCATACTGTAAGGACAAAGGATACTTGGTGGACTGGGCCAAGTACTACCTCGAAAGGCCAGATGAAATGTCAAGCCTGGTGGATCCTGAACTGAAGCATTTTAGACATGAAGACCTCAAAGTGATATGCGAGGTAATAACTCTCTGTATCAACCCTGATAAAACTGCTCATCCATCTATGCGAGAATTATGTAGCATGCTGGAGAACAGAATTGACACATCAGTAAGCGTGGAGCTTAAGTCGTCATCTTTGGCTTGGGCTGAACTTGCACTTTTATCTTAA 1992 0.4347 MKPRTSLWFLSLIYTLSLVASDTVPSNEVWALRSFKEAVYEDLYQVLSNWDTVEADPCNWFGVTCTMVRDHVIKLNISGSSLKGFLAPELGQLTYLQELILHGNNLIGTIPRELSELKYLRVFDLGMNQLTGPIPPEFGNLSRVVKINLQSNGLTGRLPPELGNLIFLQELRLDRNRLQGPIPAGDSSNFASNMHGMYASKENATGFCRSSQLKVADFSYNFLVGSIPKCLEYLPRLSFQGNCIQSQDLKQRPSLQCAGASPASAKSQPVVNPSHQPAEYVSKHHGASKPVWLLALEIVTGTMVGSLFLVAVLAALQRCNKKSSIIIPWKKSGSQKDHTAVYIDPEMLKDVRRYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEEHWTGYLELYFQREVADLARLNHENIGKLLGYCREDTPFTRMLVFDYASNGTLHDHLHCYEEGCQFSWTRRMKIAIGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFSPKLVDFESWKTILERSEKNSGSIGSQGAICVLPNSLEARHLDTEGNIFAFGVLLLELISGRPPYCKDKGYLVDWAKYYLERPDEMSSLVDPELKHFRHEDLKVICEVITLCINPDKTAHPSMRELCSMLENRIDTSVSVELKSSSLAWAELALLS 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00325 663 Gene3D Phosphorylase Kinase; domain 1 338 445 - -
Phco4g00325 663 ProSiteProfiles Protein kinase domain profile. 364 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00325 663 PANTHER PROTEIN MALE DISCOVERER 2 15 663 - -
Phco4g00325 663 Gene3D Transferase(Phosphotransferase) domain 1 446 653 - -
Phco4g00325 663 MobiDBLite consensus disorder prediction 255 277 - -
Phco4g00325 663 MobiDBLite consensus disorder prediction 255 275 - -
Phco4g00325 663 Gene3D Ribonuclease Inhibitor 139 261 IPR032675 -
Phco4g00325 663 Pfam Protein tyrosine and serine/threonine kinase 368 636 IPR001245 GO:0004672|GO:0006468
Phco4g00325 663 SUPERFAMILY L domain-like 26 238 - -
Phco4g00325 663 Gene3D Ribonuclease Inhibitor 27 138 IPR032675 -
Phco4g00325 663 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Phco4g00325 663 SUPERFAMILY Protein kinase-like (PK-like) 342 638 IPR011009 -
Phco4g00325 663 FunFam Leucine-rich repeat receptor-like protein kinase 25 184 - -
Phco4g00325 663 FunFam Inactive receptor-like serine/threonine-protein kinase 338 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00325 Phco-Chr4 2068916 2073104 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Phco4g00325 PK_Tyr_Ser-Thr 7.8e-19 CL0016