Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00315 ATGGGGAAGGGAAAACCTAGGGCCGTTGAGAAAGGTGTGGTAGGACCTAGTTTCAGTGTTGCATCCTCGACTATACCTGCAGGGCCTGTGTATTACCCTACTGAGGATGAATTCAAGGATCCTTTGGAGTATATATACAAGATTAGACCAGAAGCTGAGCCTTATGGAATTTGTAAGATTGTGCCTCCAAAGAGTTGGAAACCCCCTTTTGCTTTGGATCTGCACTCTTTCACTTTCCCTACCAAGACTCAGGCCATTCACAAGCTCCAGGCTCGCCCTGCTTCCTGTGACTCCAAGACCTTTGACTTGGACTACTCTAGGTTTTTGAAGGATCACTCTAGCAAGAAGTCCAGGAAAAGGGTTGTGTTCGAGGGTGCGGAGCTCGACTTGTGTAAGCTATTCAATGCCGTGAAGCGCTATGGTGGTTATGATAAGGTTGTTGATGGGAAGAAGTGGGGGGATGTTGCCCGGTTTGTGAGGTCCAGTGGGAAGATTACGGATTGCGCTAAGCATGTCCTGTGTCAGCTGTACCGTGAACATTTGTATGATTACGAGAATTTTTATAACAAGATGAATCAAGGGACAGACCAGAGTTGTAAGAAAAGCTTGTATGAGGAACACAAGAGTGATTGTGGGGCGAAACCCCTGGTGTCGAAGAGGATTCCCAAGAGTGTCGATTGTTCGAAACAGAAGGATGTTAAAGTGCAAGGAGAAGAGCATGATCAGATTTGTGAACAATGTAAAAGTGGTCTGCATGGGGAGCTCATGCTTTTGTGTGACAGGTGTGATAAGGGATGGCATACATACTGTCTTTCCCCGCCATTGAAGCAAATTCCTCTGGGAAATTGGTATTGTTTCAACTGCTTGAATTCTGATGGGGACAGCTTTGGTTTTGTGCCCGGGAAGCACTATTCATTGGAAGCTTTTAGACGTAAAGCGGATATGTCAAGGAGGAGATGGTTTGGATCAGGGCCTGTTTCAAGAGTGCAAATTGAGAAAAAATTTTGGGATATTGTGGAGGGATTGGTTGGTGAGGTTGATGTTATGTATGGGAATGACTTGGATACATCTGTTTGTGGGAGTGGTTTTCCACGTGTAGCTGATCAGAAACCAGAATCAATTGATGACAAATTATGGGAAGAATACACAACTAACCCTTGGAATCTTAATAACCTGCCGAAGTTGAAAGGTTCAATGCTCCGAGCTGTTCATCACAATATCACTGGTGTCATGGTACCCTGGCTATATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCAATGAATTATCTACACTGGGGAGAGGCAAAGTGCTGGTACAGTGTGCCTGGTAGTCAAGTCAGTGCTTTTGAGAAGGTGATGAGAAACAGTCTTCCCGATCTTTTTGATGCACAACCTGATCTGCTTTTTCAGCTTGTTACTATGCTAAACCCATCTGTATTGCAAGAAAATGGAGTTCCTGTCTACAGTATACTTCAGGAGCCTGGGAATTTTGTTATTACCTTCCCCAGGTCTTACCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCTGCCGACTGGCTACCACATGGTGCTTTTGGAGCTGATCTCTATCAACGGTATCACAAAACTGCTGTCTTATCTCATGAGGAGCTTCTTTGTGTAGTGGCCCAGTATGGTGAAGTTGACGGCAGGGTGTCTTCTTATTTGAAGAATGAATTGTTGAGAATGTCAGTTAAAGAAAAATCTCGTAGAGAGAAACTTTGGAAACATGGTATTATTAAGTCTTCTCGCATGGCTCCTCGAAAATGTCCCCAATTTGTGGGAACTGAAGAAGATCCAACATGCATCATATGCCAGCAATATCTCTATCTCTCTGCTGTTGTATGTGGTTGCAGGCCATCAGCTTTTGTCTGTCTAGAGCACTGGGAACACCTTTGTGAGTGCAAAACTGTTAAACTGCGTCTTCTCTATCGTCATTCACTTGCAGAATTGTACGACTTTGCCTATTCTATGGACAAATATACTTCTGAGGACAAAGCTGAGTGTAGAAGTATGAAAAGGCAGCCTTCATGTCTCAGTGCTTTGACCAAAAAGGTGAAAGGTGGCTCCATTACTTTTGCTCAACTTGCTACAGAGTGGCTTCTGCAATCTAGTACTATTCTTCAGAATGTTTTTTTGCAAGATGCATTTGTTACTGCACTAAGGAAAGCTGAACAATTTCTTTGGGCTGGTTCTGAGATGGATTCTGTGCGAGACATGGTAAGGAATTTGCTTCAAGCTCAGGAATGGGCAGAAGGGATAAGAGACTGTGTGACAAAAATTGAGTTATGGTTGTATCATCGGGACTCTAGTGTAAAGAAGGTTCATTTAGAATTCGTTGATGAGTTGCTGAAATTTAGTCCTGCGCCTTGCAATGAGCCTTGTTATCATAAACTGAAGGAGTATGCAGAGGAAACAAGGTTGTTCGTTCAGGAGTTTGATACTGCTTTGTCAATGTGTTTAAATATGTCTGAGTTGGAACTTTTGTACTCCAAAGCTTGTGGCTTACCCCTCTACGTGAAAGAAAATAAGAAATTGGAAGGAAAAATTTCTTCAACCAAGGCATGGCTGGATAGTGTCAGAAAGTGCCTCTCAGCAAGACAGCCTGCTGCACTACATGTTGATGTTCTTTATAAACTAAAAGCAGAGTTTTTGGATCTTCAAGTTCAACTCCCGGAGATAAATGTCCTTCAGAATCTACTAGATCAAGCTGAATCTTGTAGTGCTCAATGTCATGATATGTTAGAAGGACCTATGAATCTGAAGAATGTTGGTTTGCTGCTTAAGGAATGGGAAAATTTTGCAGTTGATGTACCAGAGCTCAAGCTTCTAAGGCAATACCATTTGGATACTGTTTCATGGGTTTCCCACTTTAATGATGTTTTAGGGAGAGTTCGCATGCAGGAAGATCAGCATAATGCAGTTGATGAATTGAATAGTATTTTTGAAGCTGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCATTGGTTGAGATTGAGCTGAAAAAGGCTAACTGCCGGGAAAAGGCTGTGAAGGCACATGATTTTAAGATGCCTTTTGAATTCATCCAGCAACTGTTGAAGGAGGCCACCACGCTTCAAATTGAGGGAGAGAAACAATTTGTCAATTTATCTTGCATGCTTACTGTTGCCATTCCTTGGGAGGAAAGGGCTAAAGAGATGCTTTCACATGAGGCTTCTATTTCGGACTTTGAGGACATGATCAGAGCTTCAGAGAACATATTTGTTATTCTTCCTTCACTTAATGATGTCAAGGATGCATTATCAGAAGCTAATTCCTGGTTAAAGAATTCTGAACCGTATTTCGTCTCTTCTATGCGGGCTTCAGATTCTTCGCAGAAAGTTGAGGACTTACAGATGTTGGTTTCTCAATCGAGGCATCTTAAAGTATCATTTAAAGAAAGAGGGATGCTTGAATTGGTTTTGAAGAACTGCAGAACATGGGAGTATGAAGCATGTTCTGTACTAAATGATGCCCGGTGCTTATTTGAACTGGAAAACTCTCTGCATGAAATAGACAGCGGTTTAATGTGTAAAGTGGAAGATTTGATTGTAAGAATCCAATCCACCATAGCATCCGGTATATCGCTTGGTTTTGACTTCAATGAGATTTCAAAACTTCAAGCATCTTGTTCTACGCTGCAATGGTGCAAAAGGGCCTTGTCTTTCTCCAATTGTTCTCCTTCTTTAGAGGACGTTTTGGAGGTTGCAGAAGGTCTTTCTCATTCATCTGTTTCTGGGGCTCTGTTGAAACTATTGATAGGTGGGCTTGAATGGCTTAGGAAGGCATTAGAGGCAATTTCTCGTCCTTGTAATTCTAGAAGACGCAAGTTGACTGACGTACAAGCTATTCTTACTGATTATCAGACTATTAATATGACCTTTACAGCAGTAAATATTCAACTTGAAGAGGCCATTGGAAAACATAAGTTGTGGCAAGAGCAAGTGTGCCAATTTTTTGGTCTAAGTTTTAGAGAACGATCTTGGTCTTCAATATTGCAGCTCAAGGAATATGGAGATACCATTGCCTTTAGTTGCTCTGAACTGGATTTGGTTTTATCTGAAGTTAAGAAGGTGGAAAATTGGAAGAACACATGCATGGATAAACTAGGAACTTTATTCGAAAATGAAAATTTGCTACTTCATGCACTGGAGAAGATGAAACAGACCCTAGATAGATCGATCTTTATGTATGACAAATTGCAAAATCTGAAGGAACCGAACCTGTGTATCTGCTGCTTTGATGATTCTAAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGCTATCATCAGCAATGTGTTGGACTAACAGAAAAAGACGTGGCCGTTGAAAACTACCAGTGCCCATATTGTGAAATTCTAAGGGGTGAATTCTGTTATCAGAATGGAGGTGCTCTCCTGAGGTTTGAGAAGAAGCGTGTTGAATTGAAAGTTCTTACTGAACTCATGTCTGATGCGGAAAATTTCTGTTTATGGATTGATGAAAGAGATGTTTTGAGTCAAGTTGTTGAGAAAGCCCTTTCATGCAAATCTTTCTTGAAAGAAATATTAATCCTTGCATTGGCTAATGTTGGTAAAGATATTTGCGTCATCTCTGAAAAATTGGCCACTGCTGTAAAGGCTTGCAATGTGGCTGTTGTCTATGATCAGAACGATACTTGTGACCTTGAGCTGACTTTAGCAAAAAACTCGTGGAAAGTTCAAGTCAATAGATTATTAAATGGTGTACCAAAGCCCACTATCCAGCATATTCAGAAGCATCTGAAGGAGGGACTTGCTATGGGCATATCACCTGAAGATCACTATATGTTGAAAATTACACATGTGAATAGCTTAGGTTTGCAGTGGGCAGAACTAGCCAAAAAGGTGGCATCGGATTCTGGGGCTCTCAGCCTGGATAAAGTTCTTGAACTTGTAGTGGAAGGTGAAAAGTTGCCTGTTGATGCGAATGAGGAACTAAGGATGTTAAGGGAACGATGCATGCTTTACTGCATTTGTCGAAAGCCCTTTGATCCAGAAAGGATGATTGCATGTTGTCATTGTAATGAGTGGTATCACTTTGATTGCATGAAACTGCCATGCACAAGAGAGGTCTACATTTGTCCCGCGTGTACCCCATGTACAGAAGGATTACTTCCAAACCATGACAGATTAACTAGTGGTAAATTTGAGGAGCCTAAAACCCCGTCTCCCAGGCATTCAAACCCTAGAAAGAAACAGAAGAGAGATGTGCCCAGTCTCACATGCAATACGTTCGCTACCAGGGATCAAGATAGTGAGTGTAGGTATTCGAGTGGGATAGAATGTCTAAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCAGCTAAGAAACGTATTGAACTTCGAAGTCTTTCTCCATTTCTTTGCATTCAACGATAG 5499 0.4153 MGKGKPRAVEKGVVGPSFSVASSTIPAGPVYYPTEDEFKDPLEYIYKIRPEAEPYGICKIVPPKSWKPPFALDLHSFTFPTKTQAIHKLQARPASCDSKTFDLDYSRFLKDHSSKKSRKRVVFEGAELDLCKLFNAVKRYGGYDKVVDGKKWGDVARFVRSSGKITDCAKHVLCQLYREHLYDYENFYNKMNQGTDQSCKKSLYEEHKSDCGAKPLVSKRIPKSVDCSKQKDVKVQGEEHDQICEQCKSGLHGELMLLCDRCDKGWHTYCLSPPLKQIPLGNWYCFNCLNSDGDSFGFVPGKHYSLEAFRRKADMSRRRWFGSGPVSRVQIEKKFWDIVEGLVGEVDVMYGNDLDTSVCGSGFPRVADQKPESIDDKLWEEYTTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEAKCWYSVPGSQVSAFEKVMRNSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPHGAFGADLYQRYHKTAVLSHEELLCVVAQYGEVDGRVSSYLKNELLRMSVKEKSRREKLWKHGIIKSSRMAPRKCPQFVGTEEDPTCIICQQYLYLSAVVCGCRPSAFVCLEHWEHLCECKTVKLRLLYRHSLAELYDFAYSMDKYTSEDKAECRSMKRQPSCLSALTKKVKGGSITFAQLATEWLLQSSTILQNVFLQDAFVTALRKAEQFLWAGSEMDSVRDMVRNLLQAQEWAEGIRDCVTKIELWLYHRDSSVKKVHLEFVDELLKFSPAPCNEPCYHKLKEYAEETRLFVQEFDTALSMCLNMSELELLYSKACGLPLYVKENKKLEGKISSTKAWLDSVRKCLSARQPAALHVDVLYKLKAEFLDLQVQLPEINVLQNLLDQAESCSAQCHDMLEGPMNLKNVGLLLKEWENFAVDVPELKLLRQYHLDTVSWVSHFNDVLGRVRMQEDQHNAVDELNSIFEAGLSLKIQVDELPLVEIELKKANCREKAVKAHDFKMPFEFIQQLLKEATTLQIEGEKQFVNLSCMLTVAIPWEERAKEMLSHEASISDFEDMIRASENIFVILPSLNDVKDALSEANSWLKNSEPYFVSSMRASDSSQKVEDLQMLVSQSRHLKVSFKERGMLELVLKNCRTWEYEACSVLNDARCLFELENSLHEIDSGLMCKVEDLIVRIQSTIASGISLGFDFNEISKLQASCSTLQWCKRALSFSNCSPSLEDVLEVAEGLSHSSVSGALLKLLIGGLEWLRKALEAISRPCNSRRRKLTDVQAILTDYQTINMTFTAVNIQLEEAIGKHKLWQEQVCQFFGLSFRERSWSSILQLKEYGDTIAFSCSELDLVLSEVKKVENWKNTCMDKLGTLFENENLLLHALEKMKQTLDRSIFMYDKLQNLKEPNLCICCFDDSKDQEFLTCSTCMDCYHQQCVGLTEKDVAVENYQCPYCEILRGEFCYQNGGALLRFEKKRVELKVLTELMSDAENFCLWIDERDVLSQVVEKALSCKSFLKEILILALANVGKDICVISEKLATAVKACNVAVVYDQNDTCDLELTLAKNSWKVQVNRLLNGVPKPTIQHIQKHLKEGLAMGISPEDHYMLKITHVNSLGLQWAELAKKVASDSGALSLDKVLELVVEGEKLPVDANEELRMLRERCMLYCICRKPFDPERMIACCHCNEWYHFDCMKLPCTREVYICPACTPCTEGLLPNHDRLTSGKFEEPKTPSPRHSNPRKKQKRDVPSLTCNTFATRDQDSECRYSSGIECLRWQNRKPFRRAAKKRIELRSLSPFLCIQR 1832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00315 1832 Gene3D - 87 208 IPR036431 GO:0003677
Phco4g00315 1832 SMART PHD_3 1439 1485 IPR001965 -
Phco4g00315 1832 SMART PHD_3 1696 1738 IPR001965 -
Phco4g00315 1832 SMART PHD_3 243 289 IPR001965 -
Phco4g00315 1832 FunFam Transcription factor jumonji (JmjC) domain-containing protein 15 118 - -
Phco4g00315 1832 SUPERFAMILY FYVE/PHD zinc finger 1436 1485 IPR011011 -
Phco4g00315 1832 SMART bright_3 96 190 IPR001606 GO:0003677
Phco4g00315 1832 Pfam PLU-1-like protein 1214 1413 IPR013637 -
Phco4g00315 1832 Pfam PLU-1-like protein 943 1179 IPR013637 -
Phco4g00315 1832 Pfam PLU-1-like protein 889 1038 IPR013637 -
Phco4g00315 1832 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Phco4g00315 1832 MobiDBLite consensus disorder prediction 1751 1778 - -
Phco4g00315 1832 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Phco4g00315 1832 SMART cupin_9 381 547 IPR003347 -
Phco4g00315 1832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 293 IPR013083 -
Phco4g00315 1832 Pfam C5HC2 zinc finger 624 675 IPR004198 -
Phco4g00315 1832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1413 1490 IPR013083 -
Phco4g00315 1832 Pfam jmjN domain 29 62 IPR003349 -
Phco4g00315 1832 Pfam PHD-finger 243 290 IPR019787 -
Phco4g00315 1832 SUPERFAMILY Clavaminate synthase-like 375 562 - -
Phco4g00315 1832 ProSiteProfiles ARID domain profile. 95 189 IPR001606 GO:0003677
Phco4g00315 1832 PANTHER LYSINE-SPECIFIC DEMETHYLASE 23 1124 - -
Phco4g00315 1832 SUPERFAMILY FYVE/PHD zinc finger 1690 1743 IPR011011 -
Phco4g00315 1832 CDD ARID 97 185 - -
Phco4g00315 1832 SMART JmjN_1 27 68 IPR003349 -
Phco4g00315 1832 ProSiteProfiles JmjC domain profile. 381 547 IPR003347 -
Phco4g00315 1832 ProSitePatterns Zinc finger PHD-type signature. 1440 1484 IPR019786 -
Phco4g00315 1832 Pfam ARID/BRIGHT DNA binding domain 101 185 IPR001606 GO:0003677
Phco4g00315 1832 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Phco4g00315 1832 SUPERFAMILY ARID-like 78 199 IPR036431 GO:0003677
Phco4g00315 1832 FunFam Predicted protein 349 552 - -
Phco4g00315 1832 ProSitePatterns Zinc finger PHD-type signature. 1697 1737 IPR019786 -
Phco4g00315 1832 CDD PHD_RSF1 244 288 - -
Phco4g00315 1832 SMART ARID_2 92 185 - -
Phco4g00315 1832 SUPERFAMILY FYVE/PHD zinc finger 238 291 IPR011011 -
Phco4g00315 1832 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Phco4g00315 1832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1681 1739 IPR013083 -
Phco4g00315 1832 Gene3D Cupin 21 541 - -
Phco4g00315 1832 MobiDBLite consensus disorder prediction 1751 1765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00315 Phco-Chr4 1995616 2014817 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Phco4g00315 PLU-1 3.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00315 4 1995616 2014817 Phco4g00315 4 1995616 2014817 ECH
Phco8g00614 8 6160849 6168176 Phco4g00315 4 1995616 2014817 PCT