Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00295 ATGAGGAAGCATGCGCGGAGTGCGCAGTGCACACCCAGATACCCAAAAAGGCTAGCTGATGAGAAGAAGAGAGAAGAGAGAAGTGAGAAAAGGGATAGTGAGGTGATGGGAAGAGAAATTTGTGGTTTGTGGATTATTTTGTGGGATGATACCACTCAACAAACCAAGCATACCCCTTGCAACAATATTCCAGCAACACAACTGTGTGAAGGAAAATCATCAACTGGATTTTGCTACTCTGATGTATCACCGGGAAATCCAACGATGCTAGTGAACCAGATCCAAGGCTTCGTGTCAGACCCGGAGATGTACAACCTCAGCACAGGCATGGAAATGATAGGGTTTCCAAAGAGTGACACCAACGCTGTCATGTGGAGAAGTTTCATACCCAAACCGGGTCCCTCCTCTTCCAAGACCATCAACGACTCTTCCACCCCTTTCTACCACCATGACTACAACAGCAGCAAGCCTTCAGATTTCACACCCGGGAATATTTCTGAAACAAGTGCCGAGAATCTAATCGTAGGAGCTCACGATTCAGCCCCGTGGCAAGACGACAACAACCATAGCAGGTTTGATGACTCTTCTTTAAGGTGTGTGTTCCCTTGTGAAGCCAACGAGAGGCCTAGTCAAGGTCTTTCACTCTCTCTCAGTTCAACCAACCCTTCCACTATCGGGTTGCAGTCTTTTGAGCTACGACAAACAAGCCATCATCCTGATTTTGTTCCCTCGAGTTCCAGAGAAGGGTTCTTTGGAAAACCAGTGAGTGTTCAGCAGCAACAGATGTTACAAGACGGGTATGTGAGTTCTAATTCCAAAGCTACAAGTGTTTACCAACAAGGACATTTCCTGGTGAAGAACTCCAAGTATTTGGTGCCTGCACAGGACCTTCTCAACGAGTTTTGTAGCCTAGACGCAAAGCAAAGTGAGGCGGGAAAGCCCAAATCGTTGAAGAAGCAGTGGGAAGAGGAAAACAACTGTACCGGTTCCTTGAAGAAGCCTTCTCTGACCTCTCTCGAGTTCGTGGAATTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTTGACAGAAGGTACAAGCACTACCGCAATCAGATGAAGAGCGTGGTGTCGTCGTTTGAAACGGTGGCGGGGAATGGTGCTGCCACGGTGTACTCGGCGTTGGCGCTGAAAGCTATGTCGAGACATTTCAAGTGTTTGAAGGATGGGATTTTGGGGCAAATTCAAACAACAAGAAAAGCCATGGGAGAGAAAGACCCAGTTGCACCAGGCACAACAAGGGGTGAAACGCCGAGGCTCAAAGTCATTGACCAAGCACTGAGACAACAAAGGGCGTTTCAGCAAATGAGCATGATAGAAACCCACCCTTGGAGACCCCAACGTGGCCTTCCCGAACGTGCTGTTTCGGTTCTTCGGGCTTGGCTTTTTGAGCATTTTCTCCATCCGTACCCAAGCGATGTCGATAAGCATATTTTAGCACGCCAAACCGGTCTCTCGAGAGGCCAGGTATCGAATTGGTTTATTAACGCAAGGGTGAGATTATGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAAGTGAAGGATCATGAAAACAACATGGCTTCCTCGGAGGGTGCTACTGATCCAGACAATGATATAAACCCAAATGTTCAAAACCCTCCACTTCATTCATCACGATCAGAGGATCAGAAGCCATCACTGCTTCGAATGGACTCCGAGTGTGCGTCCTCCATCATCAACAACCATACCCTAGATAACAAAAACGACCCAAAGGGCCAAGAACAGTGCTTTGGGTCAGTGGAGCTTGATTTTTCATCATACACACACCACTCCTCGGGCATGGTTTCTTTCGGAAGTAATGATCAAAATGGGAACAGCCAGAGCGGGGTGTCTTTGACGCTAGGGTTACAGCAGCATGGAGTGAGCCTAGCGTTCCCGCCACCAACACAGAGTTCACTCTACTACCCAAACCCAAGGGACCAAATTGAAGATTGCCAACCAGTTCAGTACTCTCTTTTGGATGGTGAAGGACAAAACCTGCCTTACAGAAATTTGATGGGAGCACAGCTTCTCCATGATTTGGCAGGATAG 2103 0.4788 MRKHARSAQCTPRYPKRLADEKKREERSEKRDSEVMGREICGLWIILWDDTTQQTKHTPCNNIPATQLCEGKSSTGFCYSDVSPGNPTMLVNQIQGFVSDPEMYNLSTGMEMIGFPKSDTNAVMWRSFIPKPGPSSSKTINDSSTPFYHHDYNSSKPSDFTPGNISETSAENLIVGAHDSAPWQDDNNHSRFDDSSLRCVFPCEANERPSQGLSLSLSSTNPSTIGLQSFELRQTSHHPDFVPSSSREGFFGKPVSVQQQQMLQDGYVSSNSKATSVYQQGHFLVKNSKYLVPAQDLLNEFCSLDAKQSEAGKPKSLKKQWEEENNCTGSLKKPSLTSLEFVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFETVAGNGAATVYSALALKAMSRHFKCLKDGILGQIQTTRKAMGEKDPVAPGTTRGETPRLKVIDQALRQQRAFQQMSMIETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKDHENNMASSEGATDPDNDINPNVQNPPLHSSRSEDQKPSLLRMDSECASSIINNHTLDNKNDPKGQEQCFGSVELDFSSYTHHSSGMVSFGSNDQNGNSQSGVSLTLGLQQHGVSLAFPPPTQSSLYYPNPRDQIEDCQPVQYSLLDGEGQNLPYRNLMGAQLLHDLAG 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00295 700 Pfam Homeobox KN domain 477 516 IPR008422 GO:0003677|GO:0006355
Phco4g00295 700 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 205 543 - -
Phco4g00295 700 SUPERFAMILY Homeodomain-like 461 527 IPR009057 -
Phco4g00295 700 Gene3D - 463 525 - -
Phco4g00295 700 SMART HOX_1 460 524 IPR001356 GO:0003677
Phco4g00295 700 MobiDBLite consensus disorder prediction 539 565 - -
Phco4g00295 700 MobiDBLite consensus disorder prediction 1 33 - -
Phco4g00295 700 ProSiteProfiles 'Homeobox' domain profile. 457 520 IPR001356 GO:0003677
Phco4g00295 700 FunFam BEL1-like homeodomain protein 4 463 525 - -
Phco4g00295 700 Pfam Associated with HOX 285 407 IPR006563 -
Phco4g00295 700 CDD homeodomain 460 521 IPR001356 GO:0003677
Phco4g00295 700 SMART prehox3 279 409 IPR006563 -
Phco4g00295 700 MobiDBLite consensus disorder prediction 534 573 - -
Phco4g00295 700 MobiDBLite consensus disorder prediction 15 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00295 Phco-Chr4 1880868 1887889 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco4g00295 POX 5.1e-45 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00295 4 1880868 1887889 Phco4g00295 4 1880868 1887889 ECH
Phco4g00295 4 1880868 1887889 Phco4g03318 4 53706239 53710039 PCT