Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00287 ATGGGTCACCACTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCTCCCGAGGAAGATGAGAAGCTCATCAGATACATTACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGCAAGAGTTGTCGCTTGAGATGGATTAATTATCTGAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCACGGGGTTGTTGGCAACAGATGGGCACACATTGCAAGCCACTTACCAGGTAGAACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCGGTGACTTCATCAATCACCACTACACAAAGTGTTGATCACCACCCTCAGTTCAATTATAATTCCAATCAACTAGATCACTTTGGCAACCAAGACCATGTAACAACAAAGCCACAGGTGCAAGAAACCATATTTTCCTCGACTTGCCCCCTATTTATGTTTGACACTAGTTCATTAGACCATGGGACAACAACAGTAGACACCACCAATGTTCGAGCAGAACTGTTCCAAGATTCATTGGGTTTGAGCGGTGAAACGTGGAACTTGAGCCACCACCAGGTCCATGCTCTTCCTCCCCAACCAGCAGAAGCAACTTTTACAGCAACTACAGTAATTGATACTACAAATTATCTGCCACCATTGATAGAGAATGTGGAAAACATGGTGCCAAGCATGGAGGTACAGTCTTGTAGTATAGACGAGGAAGGAGAAATGGCGCTGGAGTGTTTGCGGAGACAAGAGTTGAATGAGTGGGTGGAGAATCAACAACACTGTCCCAGTTTTCTTTTCTGGGACAACGTTGAAGGACAACTTGGGGGGGAAGAACTAGCACCAAACACGTCAAATATTGGAAGCAATACACTTTCACCTTTTCCTTCCTCTTTATGA 966 0.4389 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVTSSITTTQSVDHHPQFNYNSNQLDHFGNQDHVTTKPQVQETIFSSTCPLFMFDTSSLDHGTTTVDTTNVRAELFQDSLGLSGETWNLSHHQVHALPPQPAEATFTATTVIDTTNYLPPLIENVENMVPSMEVQSCSIDEEGEMALECLRRQELNEWVENQQHCPSFLFWDNVEGQLGGEELAPNTSNIGSNTLSPFPSSL 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00287 321 FunFam MYB transcription factor 6 66 - -
Phco4g00287 321 CDD SANT 69 112 IPR001005 -
Phco4g00287 321 PANTHER MYB DOMAIN PROTEIN 55 1 272 - -
Phco4g00287 321 MobiDBLite consensus disorder prediction 301 321 - -
Phco4g00287 321 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Phco4g00287 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco4g00287 321 Gene3D - 6 66 - -
Phco4g00287 321 CDD SANT 17 61 IPR001005 -
Phco4g00287 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco4g00287 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco4g00287 321 Gene3D - 68 140 - -
Phco4g00287 321 SMART sant 66 114 IPR001005 -
Phco4g00287 321 SMART sant 13 63 IPR001005 -
Phco4g00287 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco4g00287 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco4g00287 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco4g00287 321 FunFam Transcription factor MYB26 68 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00287 Phco-Chr4 1836463 1838284 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco4g00287 Myb_DNA-binding 4.9e-15 CL0123