Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00282 ATGCGATCGCAGTTGGAAGAACTTGCACGCGTGATGGCTTGGGATTTGCAAGCTATTGTGGGATGCACCATTGCCCCAGCCACCACTATGGACAACCCGAATCTCATTCTTTCTCAAGGTTTTTGTGCTGAACAAGATGACCTACTTTGCGATTTTCAGGAATTCTCAGAAACCAAAACGGTGCTTAATGAATTGGAAGAGATTTACAAACCTTTCTACCCCCGTGTTCATAACAACCCTCATCCCATCATTTCAAGTTCCCAACCTATCCCTGATAAAAATGTCAAAGAACTCAAACTATCAAACAAAGTAGACGAACAAGCACAGGATTTGCACGACACCGAAGCATCTAAATGCAGAAAAAGCAAGAAGAAGCAGAAGAACAAGAGGGTGGTGAAGTATATGACCGCGGCAGATGGTGTGTCAGACCCATGGGCATGGCGTAAATATGGGCAGAAACCAATAAAGGGATCACCCTATCCACGAAGCTATTATAGATGCAGCAGCTCCAAAGGATGTTTGGCTAGGAAGTTCGTGGAACGTAGCCATTTGGATCCCGGAGTTTTGATAGTTACCTACACCGCAGAACATAGTCCTCACCCAACTCGCAAAAACTCAAGAACAGGGAAGGGCAGTTCCAAAATTGCACCTCCAACAACTCATAGTGATGATCTGCAGACTCTCTCTCCAAGGATAAATGTGGTTGTGGAGGCTATGGAAGTTGAGCATGACCGTTTTGAAGTTGAACAGAGTAAAAGAGCTTAA 765 0.4471 MRSQLEELARVMAWDLQAIVGCTIAPATTMDNPNLILSQGFCAEQDDLLCDFQEFSETKTVLNELEEIYKPFYPRVHNNPHPIISSSQPIPDKNVKELKLSNKVDEQAQDLHDTEASKCRKSKKKQKNKRVVKYMTAADGVSDPWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKFVERSHLDPGVLIVTYTAEHSPHPTRKNSRTGKGSSKIAPPTTHSDDLQTLSPRINVVVEAMEVEHDRFEVEQSKRA 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00282 254 MobiDBLite consensus disorder prediction 205 229 - -
Phco4g00282 254 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 45 221 IPR044810 GO:0003700
Phco4g00282 254 Pfam WRKY DNA -binding domain 143 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g00282 254 MobiDBLite consensus disorder prediction 195 229 - -
Phco4g00282 254 SUPERFAMILY WRKY DNA-binding domain 134 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco4g00282 254 SMART WRKY_cls 141 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g00282 254 ProSiteProfiles WRKY domain profile. 136 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g00282 254 Gene3D WRKY domain 120 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco4g00282 254 FunFam WRKY transcription factor 22 124 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00282 Phco-Chr4 1800078 1800949 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco4g00282 WRKY 5e-22 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00282 4 1800078 1800949 Phco4g00282 4 1800078 1800949 ECH
Phco4g00282 4 1800078 1800949 Phco6g02432 6 45737197 45738394 ECH
Phco4g00282 4 1800078 1800949 Phco3g02626 3 52920082 52921658 ECH
Phco4g00282 4 1800078 1800949 Phco4g03332 4 53826098 53831052 PCT