Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00271 ATGGGAAACTGCAACAGTGAAGCCTATTCCCAAACGCAGCCACATTCCGACCATCACCAGCATCAACCCCAATCATCCAACGGCATCAGCGTCCTCCCTCCCAATTCCAAGCCCACCGTGGGCCGGGTCCTGGACCGGCCCATGGAGGACGTCCGCTCCACCTACATCTTCGGGCGCGAACTGGGCCGCGGGCAATTCGGCGTCACCTACTCAGTGACCCACAAGCACACTAACGAAAACTTGGCGTGCAAATCCATTGCCAAGCGCAAACTCGCCCACCGCGACGACTTGGATGACGTCCGTCGCGAGGTGCAGATTATGCACCACCTCACCGGCCACCGAAACATCGTCGAGCTTAAGGGAGCCTACGAGGACCGACACTCCGTCAATCTCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACCGGATCATCGCCAAGGGCCATTACTCCGAGCGCGCCGCCGCCGACCTCTGCCGCCAGATCGCCACGGTGATTCACGACTGCCACAGCATGGGAGTGATGCACAGGGATCTGAAGCCTGAGAACTTCTTGTTCCTCGGCAAGGAGGAAAACTCGCCGCTTAAGGCCACGGACTTCGGTCTCTCCGTGTTCTTCAAGCCCGGCGATGTGTTTAAGGACCTTGTTGGGAGTGCGTATTATGTTGCTCCTGAGGTGCTGCGTAGAAGTTATGGACCCGAAGCTGATATTTGGAGTGCTGGGGTTATATTGTTCATTCTGCTCTCTGGTGTCCCTCCCTTCAGGGCAGGAAATGAACAGGGTATCTTTGATGCTATTCTTCTTGGACATATTGATTTTGCATCAGATCATTGGTCTTCCATTTCAAGTAGTGCCAAAGATTTGGTCAAGAACATGTTACAAGCTGATCCCAAAAAAAGGCTCTCGGCAGTTGAAGTCCTTAATCATCCTTGGATGAGAGAAGATGGAGCATCTGATAAACCTCTAGATATAACTGTTTTAACCAGAATGAAACAATTCAGAGCAATGAACAAGCTGAAGAAAGTAGCTCTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATCATTGGCTTGAAGGAAATGTTTAAATCCATGGACACAGATAATAATGGGACAATCACTTTTGAAGAGTTGAAAGCTGGACTGCCAAAACTGGGTACTAAGATTTCTGAGTCTGAAGTAAGGCAGTTAATGGAAGCGGCTGATGTAGACGGAAATGGGACCATTGATTACATTGAATTTATAACAGCTACCATGCACATGAATAGAATGGAAAGAGAGGACCACCTATATAAAGCTTTTGAATATTTTGACAAGGATAGAAGCGGGTACATCACTATGGAAGAGTTGGAATCTGCCCTTAAAAAATATAATATGGGTGATGAGAAAACAATAAAGGAAATCATTGCCGAAGTCGATACAGACAATGATGGAAGAATTAACTATGACGAGTTTGTAGCCATGATGAGGAAAGGCAATCCAGATTTAGTAACCAAACGTCGCAAATAA 1515 0.4812 MGNCNSEAYSQTQPHSDHHQHQPQSSNGISVLPPNSKPTVGRVLDRPMEDVRSTYIFGRELGRGQFGVTYSVTHKHTNENLACKSIAKRKLAHRDDLDDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIIAKGHYSERAAADLCRQIATVIHDCHSMGVMHRDLKPENFLFLGKEENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILFILLSGVPPFRAGNEQGIFDAILLGHIDFASDHWSSISSSAKDLVKNMLQADPKKRLSAVEVLNHPWMREDGASDKPLDITVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNNGTITFEELKAGLPKLGTKISESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDKDRSGYITMEELESALKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDLVTKRRK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00271 504 SMART efh_1 359 387 IPR002048 GO:0005509
Phco4g00271 504 SMART efh_1 395 423 IPR002048 GO:0005509
Phco4g00271 504 SMART efh_1 431 459 IPR002048 GO:0005509
Phco4g00271 504 SMART efh_1 466 494 IPR002048 GO:0005509
Phco4g00271 504 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Phco4g00271 504 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00271 504 ProSitePatterns Protein kinases ATP-binding region signature. 61 88 IPR017441 GO:0005524
Phco4g00271 504 FunFam calcium-dependent protein kinase 1 141 320 - -
Phco4g00271 504 ProSiteProfiles EF-hand calcium-binding domain profile. 427 461 IPR002048 GO:0005509
Phco4g00271 504 ProSitePatterns EF-hand calcium-binding domain. 368 380 IPR018247 -
Phco4g00271 504 PANTHER SERINE/THREONINE-PROTEIN KINASE 45 487 - -
Phco4g00271 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Phco4g00271 504 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Phco4g00271 504 Pfam EF-hand domain pair 360 420 IPR002048 GO:0005509
Phco4g00271 504 Pfam EF-hand domain pair 430 492 IPR002048 GO:0005509
Phco4g00271 504 ProSiteProfiles EF-hand calcium-binding domain profile. 391 426 IPR002048 GO:0005509
Phco4g00271 504 ProSiteProfiles EF-hand calcium-binding domain profile. 355 390 IPR002048 GO:0005509
Phco4g00271 504 FunFam Calcium-dependent protein kinase 1 320 495 - -
Phco4g00271 504 Gene3D - 321 495 - -
Phco4g00271 504 FunFam Calcium-dependent protein kinase 1 57 140 - -
Phco4g00271 504 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Phco4g00271 504 MobiDBLite consensus disorder prediction 1 34 - -
Phco4g00271 504 CDD STKc_CAMK 55 312 - -
Phco4g00271 504 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00271 504 SUPERFAMILY EF-hand 351 492 IPR011992 -
Phco4g00271 504 SUPERFAMILY Protein kinase-like (PK-like) 52 326 IPR011009 -
Phco4g00271 504 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Phco4g00271 504 MobiDBLite consensus disorder prediction 1 45 - -
Phco4g00271 504 Pfam Protein kinase domain 57 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00271 504 Gene3D Transferase(Phosphotransferase) domain 1 141 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00271 Phco-Chr4 1713226 1719219 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Phco4g00271 Pkinase 6.2e-73 CL0016