Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00259 ATGCAACGCATTTTGTGTTTGGTCTCTTTGGTTTCCCTCATCCTCTCCCGACCCAATGCAGAACCCACAGAGGACAAGCAAGCACTGCTTCATTTGGTGGAAAAGTTGGCTCCTTTACGACCCCTCAATTGGAACGCAACCTCTTCTCCTTGCACCTCTTGGACCGGTGTAACCTGCAACTCTGACCACTCACGAGTTATAGCCATTCACTTGCCAGGCTTCGGCTTTCACGGAACCATTCCTCCCAATACGTTAAGCCGCGTCACGTGCTTGCAAACACTCAGTCTCAGATCTAACTCCATAACTGGTCCTCTCCCTTCTGATTTCTCCAACCTCTCTAACCTTTCCTTTCTCTACCTTCAGTTCAACAATATCTCTGGTTCCTTGCCCGACTTCTCTGCCTTGAGGAACCTATCTGTTCTCGACCTCTCCAATAACTGTTTCACTGGCACCATTCCTCTCTCCCTCTCCCATTTGACTCACCTAACTGCCATCAACCTTGCCAATAACTCGCTTTCTGGCCAAATCCCTCTCTCTCTCCACAGGTTTCCCAACTCGGCTTTCGTAGGAAACAATGTCTCTCTCCAAACAATTTCGCATTCCAAATCTGCGAAACACGGTGAAACGGCGTTGTTTTGGGTTGTTGTTGCTGCTGCTCCTGTTGCTCTTGCAGCGTTCGTTGTTTTTATCTTTGTGTGCTGGTCCAGAAAGAAGAATGGGGATTCCTTTGCTCGAAAGTTGCAGAAGGGAGATATGTCTCCGGAAAAAGTAGTTTCGAGGGACCTTGATGCGAATAATAAAATATTTTTCTTTGAGGGGTGTAGCTATGCGTTTGACTTGGAGGATTTGTTGAGGGCCTCTGCTGAGGTACTGGGGAAGGGGACGTTTGGTGCTGCATATAAGGCTGCGTTAGAGGATGCTACCACTGTTGTTGTGAAGAGGTTGAAGGAAGTGGCCGTTGGTAAGAGGGACTTTGAGCAGCACATGGAGGTTGTGGGGAATCTGAAACATGAGAATGTGGTTCAGCTAAAGGGGTACTACTATTCCAAAGACGAGAAGCTCATGGTCTATGATTACTACACTCAAGGGAGTCTCTCTGCTTTGTTGCATGGTAAAAGAGGAGAGGATAGGGTGCCTTTAGATTGGGAGACTCGAATGAAAATTGCTTTGGGTGCTGCACGAGGCCTTACTCGCATCCATTGCGAGAATGGGGGGAAGCTTGTGCATGGCAATATCAGATCCTCAAATATCTTTGTGAATACTAAACAGTATGGTTGTATATCTGATCTTGGCCTAGCAACCATTATGAGTTCAGTTCCCATACCCATCTCAAGAGCCGCTGGTTACAGAGCACCTGAAGTTACAGACACGAGGAAAGCAACGCAACCTGCTGATGTTTACAGCTTTGGTGTGGTCTTACTAGAGCTTCTCACTGGAAAATCCCCTGTGTACACAACTGGTGGCGATGAGATTGTGCACTTGGTGAGATGGGTTCATTCGGTTGTGAGAGAGGAGTGGACAGCAGAAGTGTTTGACTTGGAGTTGATCAGATATCCCAACATAGAGGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGCGTGGTGAGGGTTCCTGATCAGAGGCCTAAGATGTCGGAAGTTGTAAAAATGATAGAAAATGTGAGGCAGATTGATACAGTAGTGAATCAGCAAGCATCATCTGAGAACCAAGCCCAATCTGCAACACAAACCCCTTTAACCACTCTGCGTGATATTTAA 1764 0.4688 MQRILCLVSLVSLILSRPNAEPTEDKQALLHLVEKLAPLRPLNWNATSSPCTSWTGVTCNSDHSRVIAIHLPGFGFHGTIPPNTLSRVTCLQTLSLRSNSITGPLPSDFSNLSNLSFLYLQFNNISGSLPDFSALRNLSVLDLSNNCFTGTIPLSLSHLTHLTAINLANNSLSGQIPLSLHRFPNSAFVGNNVSLQTISHSKSAKHGETALFWVVVAAAPVALAAFVVFIFVCWSRKKNGDSFARKLQKGDMSPEKVVSRDLDANNKIFFFEGCSYAFDLEDLLRASAEVLGKGTFGAAYKAALEDATTVVVKRLKEVAVGKRDFEQHMEVVGNLKHENVVQLKGYYYSKDEKLMVYDYYTQGSLSALLHGKRGEDRVPLDWETRMKIALGAARGLTRIHCENGGKLVHGNIRSSNIFVNTKQYGCISDLGLATIMSSVPIPISRAAGYRAPEVTDTRKATQPADVYSFGVVLLELLTGKSPVYTTGGDEIVHLVRWVHSVVREEWTAEVFDLELIRYPNIEEEMVEMLQIAMSCVVRVPDQRPKMSEVVKMIENVRQIDTVVNQQASSENQAQSATQTPLTTLRDI 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00259 587 Gene3D Ribonuclease Inhibitor 22 203 IPR032675 -
Phco4g00259 587 ProSiteProfiles Leucine-rich repeat profile. 114 136 IPR001611 GO:0005515
Phco4g00259 587 FunFam pollen receptor-like kinase 1 254 359 - -
Phco4g00259 587 ProSitePatterns Protein kinases ATP-binding region signature. 291 322 IPR017441 GO:0005524
Phco4g00259 587 Gene3D Phosphorylase Kinase; domain 1 253 359 - -
Phco4g00259 587 ProSiteProfiles Protein kinase domain profile. 285 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00259 587 FunFam Probable inactive receptor kinase RLK902 22 181 - -
Phco4g00259 587 Pfam Leucine Rich Repeat 137 159 IPR001611 GO:0005515
Phco4g00259 587 Pfam Leucine Rich Repeat 91 112 IPR001611 GO:0005515
Phco4g00259 587 SUPERFAMILY L domain-like 38 197 - -
Phco4g00259 587 SUPERFAMILY Protein kinase-like (PK-like) 289 553 IPR011009 -
Phco4g00259 587 PANTHER OS05G0588300 PROTEIN 4 569 - -
Phco4g00259 587 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 360 567 - -
Phco4g00259 587 Pfam Leucine rich repeat N-terminal domain 23 60 IPR013210 -
Phco4g00259 587 MobiDBLite consensus disorder prediction 567 587 - -
Phco4g00259 587 Pfam Protein kinase domain 288 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00259 587 Gene3D Transferase(Phosphotransferase) domain 1 361 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00259 Phco-Chr4 1641173 1643545 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco4g00259 Pkinase 2.4e-35 CL0016