Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00246 ATGGAGAGTGAAAAAAGTTGTGAGCAGAAAGCACTGGTGAGTGAGCTAATTCAGGGGTTGGAGTTGGCAACAAAGTTGAATGAATACTTGAATATACCCTCTTCGGTTGACACTACGAACTCACTACTGCAGAGGATATTGTCTTCTTATGACAAGGCTTTCCTTATTCTAAGACAGAATGCACCAATTTCGAAGTCAGAAGAAGCCATGCAGCAACTAACTCAAACTTCGTCACCACAGTTCCTGGTATCCGTTCACCAAAATCCTGAGGACTATGAAGGTGCCCGCAAGGATGATCAAGAACTAAATCAAAATGCAAAGAAAAGAAAGAGGATGCCCAAATGGACGCAACAGGTTAGAGTGAAGATCCAAGATGGGGTTGAAGAACCTCACCACGATGGTTACAGCTGGAGAAAATACGGACAGAAAAACATCCTCAGTGCAAAACATCCCAGAAGCTACTATAGGTGCACATTTCGCAAAACTACGGGCTGCAATGCCAAGAAACAAGTGCAGAGATCAGAAGAAGACCCCAATGTCTTAGACATCAGTTACCACGGAAGCCACATCTGTTCTAAGGGAAACGGTGCCGTTCCATCACCAAAATCAGCAGACATGGAAGAGGAACCGCAAGGTTGTGATAGTAACGTTCAGTTTCATTATGCACAGTCATCGCAAGAAAGACTCACAGACTACACAAGCACATTGTCTGTGGAAACTGATAACATAACGCCACATCTATTCCCTTCTTTTGAATGCATGACACAAGATAACCACCACCACACCCTTTTTCCTTCCTTGGTACAAGAGAATGATCCCTTTTTCAGCACCCTTGCTCAAACATCCTTGTTATCTCCGAACACACCTGAATCAAGTTACTTTGTGTCTCCGTCTTTCACCGTACATGATGAATTCGACAGGGTCTTTGACAAGCCGTGCGCTGATTCTGATGCTGCCGGGATCGTTTTAGCTGATGCATCAACCGCCAATTCTCCAATTTTTGACGTTAATTTCTCACTCGATGCAGTGGGAATTGGTGAAAATTTCCCCTTCCATTCTAAGTGCACTTGA 1071 0.4398 MESEKSCEQKALVSELIQGLELATKLNEYLNIPSSVDTTNSLLQRILSSYDKAFLILRQNAPISKSEEAMQQLTQTSSPQFLVSVHQNPEDYEGARKDDQELNQNAKKRKRMPKWTQQVRVKIQDGVEEPHHDGYSWRKYGQKNILSAKHPRSYYRCTFRKTTGCNAKKQVQRSEEDPNVLDISYHGSHICSKGNGAVPSPKSADMEEEPQGCDSNVQFHYAQSSQERLTDYTSTLSVETDNITPHLFPSFECMTQDNHHHTLFPSLVQENDPFFSTLAQTSLLSPNTPESSYFVSPSFTVHDEFDRVFDKPCADSDAAGIVLADASTANSPIFDVNFSLDAVGIGENFPFHSKCT 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00246 356 Gene3D WRKY domain 116 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco4g00246 356 MobiDBLite consensus disorder prediction 192 212 - -
Phco4g00246 356 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 279 IPR044810 GO:0003700
Phco4g00246 356 SUPERFAMILY WRKY DNA-binding domain 129 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco4g00246 356 Pfam WRKY DNA -binding domain 133 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g00246 356 ProSiteProfiles WRKY domain profile. 126 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco4g00246 356 SMART WRKY_cls 131 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00246 Phco-Chr4 1545950 1547183 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco4g00246 WRKY 7.4e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00246 4 1545950 1547183 Phco4g00246 4 1545950 1547183 ECH
Phco4g00246 4 1545950 1547183 Phco4g03378 4 54141262 54142571 PCT