Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00212 ATGGGGTGCATCTGCTCAAAAGACTCCTCAAACAAAGACAGAGCTGATGAATATGAGAAAGAGAAAGAGAAAGAAAAAGAATCGAACAAGTCTTCAGTACAACTGGTTGCTCCTTCTGTCTCAACTGCACAGTTAGATAGTAGTAATAGCACGGATGGTTCGGTGCCCCGAATGGTTAATTCATCATCACAACCAATCAGAGGGTCTCTCAAAGTGGTTTCAGAGGATAAAAGCAACCACTTAGATGCCACAAAAAGCCAGCACCAGAAGTGTATGACAGTGAGTTCTGGTGTAGATGAAAAATTGCCGATGATGAGCAGAATACTTAGCGTGCAGCATATTGCAGGAGAACAAGTTGATTCGGGATGGCCAGTTTGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGGTGGGTGCCTCGAAGGGCAGACTCTTTTGAAAAATTAGACCAAGTTGGACAAGGGGCTTATAGTACTGTGCATAAAGCTCGTGACCTTGAGACAGGTAAAATTGTGGCTTTGAAGAAGGTTCGCTTTTCAAGTGCAGATGTGGAAAGTGTAAGGTTCATGGCAAGAGAAATCTATATTATGCGTCAACTTGACCATCCTAATGTCATGAAGCTCGAGGGTCTTGTCACGTCAAGAACATCCACTAGTTTGTACCTTGTTTTTGAATACATGGAACATGACCTTGCTGGGCTAGCAACTGTACATGGCTTGAAGTTAACTGAACCACAGATAAAATGTTTTATGCAGCAACTGCTTCGTGGGCTTGAACATTGCCACAGTCGTGGTGTGTTGCACCGTGACATCAAGGGTTCAAATCTTTTGGTTGACAACAATGGAAATCTCAAAATAGGAGATTTTGGTCTTTCAACAGTATATGATCCTGAAAAGAAGCAACCATTGACTAGCCGTGTTGTGACTCTGTGGTATAGGGCACCTGAGCTTTTGCTGGGTGCTACAGAGTATGGAGATGCAATTGACTTGTGGAGTGTAGGTTGCATTCTAGCCGAATTGCTAGCGGGGAAGCCGATCATGCCTGGAAGAACAGAGGTTGAACAAATGCACAAAATTTTTAAACTTTGTGGTTCGCCATCTGAAGACTATTGGCAGAAAACAAAACTTCCACATGCAACAAGTTTTAAGCCACAGCACCCTTACAACCGCCAAGTGTCTGAAACATTTAAAAATCTTTCTCCTTCGGCATTGGCTCTTGTTGATAATCTCCTAACAATAGAACCAGAAGGTCGAGGATCAGCAACTTCCGCACTCGAGAGTGAGTTCTTCACTACAAACCCCTTACCTTGTGATCCCTCAAGTTTACCAAAGTTTTCACCAAGCAAGGAGTTTGATTCCAAGCGTCGAGACAAGGAAGCTACAAGGAAAAACCAGGAAGCTGTTAGAGGACGTGCACCAGCATCTGTTTTAAGGGGAGCAGGAGATACCAAGGCATTGGGTTCACCACAGTATAACGCTCATGGAAATATATCTATGCGGAGGAAACCAAATACTTCAATGTGCCGTCAAAAATATTTATGCCGGGAGAATGGGGAACCCAATGAAAACGGTGAAGGAGGCATAGTAAGTGTGCACGGTGGTGGCTACACGCATGCTACTACAATGATGCACAACAGTGTAGCGGGATCATCCACAGTGTGCAAGAGATCAGAATCATATTTGAACAAGCAGAGGTCTCATTTGAATCATGCAACAGCAAATTTATGTACCTCTTCCGTCAAAAAGGAACCAGGCTCGTCTGCTCGTGAATCCAACATGGGTTATATGCCGAAGAAAAATAGGATACACTGCTCTGGACCATTGATGCGTCCGGGTGGAAACCTTGATGATATGCTTAAAGAGCATGAGAAATTAATGCAAGATGTTTTCCGTAGCGTCAAAAAGGCCAATCCTTTTGCCCTAAAACCCAAACATTGCGAAGCAGAGGCAGTGGAGATGGAGCAGAGGCTAGCAAACAGTTGGCGAATGCCTCTCAACGACAACAAATTCATCGAAGCGGCTCTCCTGTCGGACCTCCGTGTCGACGGCCGCCGCCCCTCTGACCACCGTAAGCTCACCATCAACCTGGCCAAGCAAGACGGCTCTGCGGAGGTCCATTTGGGTCACACCCATGTCATCACCTTCGTCACAGCCCAACTCGTTAGGCCCTACAAAGACAGGCCCAACGAGGGCTCCCTCTCCATCTTCACCGAGTTCTCTCCCATGGCCGACCCCTCATTCGAGCCCGGCCGACCGGCCGAGTCCGCCGTCGAGCTTGGCCGCGTCGTCGACCGCGGCCTGCGCGAGAGCCGTGCCGTCGACACCGAGTCGCTCTGTGTCCTCTCCGGCAAACTCGTCTGGGCCATTCGCGTTGATATCCACATTCTCGACAATGCCGGAAATCTCGTTGATGCTGCCAATATTGCGGCGCTGGCTTCTCTGTTGACGTTTCGACGGCCGGAATGCTCGCTGGCCGGAGAAGACGGGCAGGAAGTGGTGGTGCATCCTCCCGAAGAGCGCGATCCGATACCGTTGATTATACATCATATCCCGATTGCTGTTACGTTTGGATTTTTCAGCAATGAAAATCTCCTTGTGATAGATCCGACGCATGAAGAAGAGTGTGTGATGACGGGACGCATGACTGCGACGCTTAATTCAAACGGCGACGTTTGTGCGATTCAGAAGGCTGGGGGAGAGGGTGTCTCTCAGAGATTTATCATGCATTGCTTGAAACTTGCTCATGCGAAAGCTATTGATATTACAACTAAGATTAAGGATGCTGTAGAAATTCACAACAATGAAAGGGCGTTACGGAAGATTAAACGGCACTCTTCGTCTGTTGTCGTGGATGTATGTGGTGCTCCTGCTGGAATAGGTGAAGAACAAAATCAATTAGTTGGTGATGAGGATGGTAGTGGTTTGGAAAATTTGAAGCTGAAAGAAGAGGAAATTTTTATGGAATGTGAAGCCACACCTTCAGGACAAGAACATAGTAAGGATGGAGACTCGAAGAATTTCACCGGTGGATCTTCAAGTTGGGATCCCTACTCAGAGGCTGTCGATTCAGATCTTCTAAAAGCTTTTCTAGCTTCACGGGGACCATCAGTTCCTATTAAACGAAAGGATTCAAGAAGTGAGACTAAGCCCAAGGAAGAACCACCTCAGGAAATCAAGACAGATATTTCTCCAATTGACAAGTCTCTAACCGGTGGGCAGAGTAACGAAGGTAAGACTCTGAAGGATGCCGTCAAGCCCAAACATAAGAGGAAAAAAAAAGTATCTTCCAATAACCAAAATTAA 3303 0.4656 MGCICSKDSSNKDRADEYEKEKEKEKESNKSSVQLVAPSVSTAQLDSSNSTDGSVPRMVNSSSQPIRGSLKVVSEDKSNHLDATKSQHQKCMTVSSGVDEKLPMMSRILSVQHIAGEQVDSGWPVWLSSVAAEAIKGWVPRRADSFEKLDQVGQGAYSTVHKARDLETGKIVALKKVRFSSADVESVRFMAREIYIMRQLDHPNVMKLEGLVTSRTSTSLYLVFEYMEHDLAGLATVHGLKLTEPQIKCFMQQLLRGLEHCHSRGVLHRDIKGSNLLVDNNGNLKIGDFGLSTVYDPEKKQPLTSRVVTLWYRAPELLLGATEYGDAIDLWSVGCILAELLAGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQKTKLPHATSFKPQHPYNRQVSETFKNLSPSALALVDNLLTIEPEGRGSATSALESEFFTTNPLPCDPSSLPKFSPSKEFDSKRRDKEATRKNQEAVRGRAPASVLRGAGDTKALGSPQYNAHGNISMRRKPNTSMCRQKYLCRENGEPNENGEGGIVSVHGGGYTHATTMMHNSVAGSSTVCKRSESYLNKQRSHLNHATANLCTSSVKKEPGSSARESNMGYMPKKNRIHCSGPLMRPGGNLDDMLKEHEKLMQDVFRSVKKANPFALKPKHCEAEAVEMEQRLANSWRMPLNDNKFIEAALLSDLRVDGRRPSDHRKLTINLAKQDGSAEVHLGHTHVITFVTAQLVRPYKDRPNEGSLSIFTEFSPMADPSFEPGRPAESAVELGRVVDRGLRESRAVDTESLCVLSGKLVWAIRVDIHILDNAGNLVDAANIAALASLLTFRRPECSLAGEDGQEVVVHPPEERDPIPLIIHHIPIAVTFGFFSNENLLVIDPTHEEECVMTGRMTATLNSNGDVCAIQKAGGEGVSQRFIMHCLKLAHAKAIDITTKIKDAVEIHNNERALRKIKRHSSSVVVDVCGAPAGIGEEQNQLVGDEDGSGLENLKLKEEEIFMECEATPSGQEHSKDGDSKNFTGGSSSWDPYSEAVDSDLLKAFLASRGPSVPIKRKDSRSETKPKEEPPQEIKTDISPIDKSLTGGQSNEGKTLKDAVKPKHKRKKKVSSNNQN 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00212 1100 CDD RNase_PH_RRP45 663 922 IPR033100 GO:0000178|GO:0006396
Phco4g00212 1100 Pfam 3' exoribonuclease family, domain 1 696 820 IPR001247 -
Phco4g00212 1100 FunFam probable serine/threonine-protein kinase At1g54610 133 228 - -
Phco4g00212 1100 Pfam 3' exoribonuclease family, domain 2 849 915 IPR015847 -
Phco4g00212 1100 FunFam Exosome complex component RRP45B 658 946 - -
Phco4g00212 1100 MobiDBLite consensus disorder prediction 579 603 - -
Phco4g00212 1100 MobiDBLite consensus disorder prediction 432 501 - -
Phco4g00212 1100 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524
Phco4g00212 1100 SUPERFAMILY Protein kinase-like (PK-like) 139 438 IPR011009 -
Phco4g00212 1100 Gene3D Transferase(Phosphotransferase) domain 1 229 470 - -
Phco4g00212 1100 CDD STKc_CDK9_like 146 430 - -
Phco4g00212 1100 ProSiteProfiles Protein kinase domain profile. 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00212 1100 MobiDBLite consensus disorder prediction 31 69 - -
Phco4g00212 1100 MobiDBLite consensus disorder prediction 1038 1060 - -
Phco4g00212 1100 SMART serkin_6 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00212 1100 Pfam Protein kinase domain 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco4g00212 1100 MobiDBLite consensus disorder prediction 9 30 - -
Phco4g00212 1100 MobiDBLite consensus disorder prediction 1084 1100 - -
Phco4g00212 1100 SUPERFAMILY Ribosomal protein S5 domain 2-like 663 875 IPR020568 -
Phco4g00212 1100 MobiDBLite consensus disorder prediction 448 466 - -
Phco4g00212 1100 MobiDBLite consensus disorder prediction 1 69 - -
Phco4g00212 1100 Gene3D - 658 948 IPR027408 -
Phco4g00212 1100 MobiDBLite consensus disorder prediction 991 1011 - -
Phco4g00212 1100 MobiDBLite consensus disorder prediction 1031 1100 - -
Phco4g00212 1100 Gene3D Phosphorylase Kinase; domain 1 133 228 - -
Phco4g00212 1100 FunFam probable serine/threonine-protein kinase At1g54610 229 470 - -
Phco4g00212 1100 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Phco4g00212 1100 SUPERFAMILY Ribonuclease PH domain 2-like 845 944 IPR036345 -
Phco4g00212 1100 PANTHER CELL DIVISION PROTEIN KINASE 144 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00212 Phco-Chr4 1312519 1321000 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Phco4g00212 Pkinase 5.5e-70 CL0016