Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00166 ATGGGAATACAAACCCAGAAAACATTTCGAGAGGAAGAGGAGGAAGAGCTGCCATGCCGTGGAACTACTGTCTCTGGTCAATCAATGTCAACTAGCAGAAGTGTTGGGTCACCGTCCAGCCGGAGTGAGCAGACAATGGCAACACCGGCTAGTGATAACACCTTTCTTAGGTTAAATAATCTTGACATACATGGTGATGACGCTGGATCACAGGGTGCAGTTGCTAGCAAGAAGAAAAAGAGGGGCCAACGCACGGTTGGTGGTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTCTGTGAGAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCTGATGAACTTGTAGCTGAATTTGCTGATCCAAGCAATGGTGCCTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGCACAAGTCTAAGTGATATTGAAGATCTAAAGACGGAACGTCTGGGGCTAAGGAATAGAATTGAAAAGAAAGCATCCTATTTGCAAGAGCTGGAGGACCAATACATAGGTCTTCAGAAACTTATACAACGAAATGAGCAATTATATAGCTCCGGGAATGCTCCCAATGGAGGTGTATCTTTACCCTTCATTCTGGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGTTGCATGATGATAACTATGTTCTCAAGGCAATGAAATTTTGTGAGAGATCTCAGAATGATAACAAACCAGACAATCCTACAGATGGCGAGGAAGGTTCTAGCATGTCAAGTTTGTATCATGCACAGGTTCCTAGTTCAGTTTCAAACCCTCCGACTAGACCTCCTTCATCTCCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAACGAGCATTGA 1029 0.4334 MGIQTQKTFREEEEEELPCRGTTVSGQSMSTSRSVGSPSSRSEQTMATPASDNTFLRLNNLDIHGDDAGSQGAVASKKKKRGQRTVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNGASTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEDLKTERLGLRNRIEKKASYLQELEDQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERSQNDNKPDNPTDGEEGSSMSSLYHAQVPSSVSNPPTRPPSSPPLPGILKARVKNEH 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00166 342 Pfam Transcription factor DP 181 313 IPR014889 -
Phco4g00166 342 SMART DP_2 180 340 IPR014889 -
Phco4g00166 342 Gene3D Transcription factor DP 179 305 IPR038168 -
Phco4g00166 342 MobiDBLite consensus disorder prediction 1 93 - -
Phco4g00166 342 Coils Coil 203 223 - -
Phco4g00166 342 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Phco4g00166 342 FunFam Transcription factor-like protein DPB 85 178 - -
Phco4g00166 342 MobiDBLite consensus disorder prediction 21 58 - -
Phco4g00166 342 MobiDBLite consensus disorder prediction 287 342 - -
Phco4g00166 342 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Phco4g00166 342 PIRSF Txn_factor_DP 3 342 IPR015648 GO:0005667|GO:0051726
Phco4g00166 342 MobiDBLite consensus disorder prediction 298 317 - -
Phco4g00166 342 Gene3D - 85 178 IPR036388 -
Phco4g00166 342 FunFam Transcription factor-like protein DPB 179 303 - -
Phco4g00166 342 CDD DP_DD 178 281 IPR014889 -
Phco4g00166 342 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Phco4g00166 342 SUPERFAMILY E2F-DP heterodimerization region 180 294 IPR037241 -
Phco4g00166 342 PANTHER TRANSCRIPTION FACTOR DP 20 323 IPR015648 GO:0005667|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00166 Phco-Chr4 985641 990025 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Phco4g00166 DP 5.9e-42 No_clan