Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00157 ATGGAGGGAGCATCGTGGAACAGCAGTGTTTGTGTGGCACCTTTTCTGAGCAAAACCTACGACATGGTAGATGACCCATCAACCGATTCGGTCGTGTCGTGGGGCGAAAACAACAACACCTTTGTTGTCTGGAACGTTCCCCAATTCGCAACAGACATCTTGCCCAAACATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAGTTGAATACTTATGGTTTTAGGAAGGTTGATCCAGATCAATGGGAATTTGCAAATGAAGGATTTTTAAGAGGGGAAAAACAACTTTTAAAAAGTATCAGCAGGCGTAAATCTGCTCAAGTAAATGGTAGTCAACAACCATCTCAAGTGCAAAAATCATCTGTTAGAGCATGTGTCGAAGTGGGGAAATTTGGGCTCGAGGAAGAGGTGGAAATACTAAAAAGGGATAAGAACGTTCTTATGCAGGAACTAGTTAGGTTGAGACAGAAACAGCAAGTGACTGACAACCAATTGCAAAATGTTGGGCAACATGTGCAGTCAATGGAGCAGCGCCAGCAGCAAATGATGTCATTCCTAGCAAAGGCCATGCAGAGCCCTGGCTTCTTAGCTCAATTTGTACAGCAGCAGAATGAAAGTAATAAACATATCACTGGGGGCAATAAAAAGAGGAGGCTCCACAGGCAAGAAGAGGATAATTTAGCCACCAACGGTCTCCATAGTGGTCTTGATGGACACGTAGTCAAGTACCAGAGTTCCATAAATGATGCTGCAAAATCGTTATTTCGCCAGATATTGCAAATAAACAATTCTACAGCAACACAATCATCAATTAAGAACCCTGATGTTTTTCTCATTGATGATATTCCTTCTGCCATTGCATCAGATAGCAGCAGTTCATCCACTCAGGTTTCTAATGTGACCCTTTCTACGGTTCCTCCTGTTTCTGAGCTGACAAGCATGGAAGTAGACTCCCAGTTTCCTCTCAATTGTATGCCCAGTATATCCGAGGTGCAATCTCCACCTCCTGTATTGGATTTTTGTCAGAGTCAAGGGGTGGAGACAGAAAGCAGTTTAGTGAATCATAATCTGAATGATGTGGGGGCTGGTAGTAGGAACATGGGGGAGATAGATGTGTCATCTGTTTTGGATGGGCCGCACACTGTAGAAGCTGGTTATTCTTCACCCGATGCAGATGGAATTTCCCAACTCCCGGATATCGATGATGAGTTCTGGGAGTTGTTTTTCAGGCCAAGCCCACTTACAGGAGACACAGAGGAAATTAAATTTAGCTCTCTAGGATGCGGTCTGACTGAAGACCAGGGTTTGCCTTTGGAAAGGGAAAATGAGAAGAAAAATGTTGATAAGATGCAGCATGTTGACAAGCTTACTAAACAGATGGGACTTCTTGCATCAAAGTCTTAA 1407 0.4364 MEGASWNSSVCVAPFLSKTYDMVDDPSTDSVVSWGENNNTFVVWNVPQFATDILPKHFKHNNFSSFVRQLNTYGFRKVDPDQWEFANEGFLRGEKQLLKSISRRKSAQVNGSQQPSQVQKSSVRACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQKQQVTDNQLQNVGQHVQSMEQRQQQMMSFLAKAMQSPGFLAQFVQQQNESNKHITGGNKKRRLHRQEEDNLATNGLHSGLDGHVVKYQSSINDAAKSLFRQILQINNSTATQSSIKNPDVFLIDDIPSAIASDSSSSSTQVSNVTLSTVPPVSELTSMEVDSQFPLNCMPSISEVQSPPPVLDFCQSQGVETESSLVNHNLNDVGAGSRNMGEIDVSSVLDGPHTVEAGYSSPDADGISQLPDIDDEFWELFFRPSPLTGDTEEIKFSSLGCGLTEDQGLPLERENEKKNVDKMQHVDKLTKQMGLLASKS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00157 468 FunFam Heat shock transcription factor 1 8 105 - -
Phco4g00157 468 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00157 468 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00157 468 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00157 468 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00157 468 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 289 IPR027725 -
Phco4g00157 468 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00157 468 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco4g00157 468 Gene3D - 8 105 IPR036388 -
Phco4g00157 468 SUPERFAMILY "Winged helix" DNA-binding domain 12 104 IPR036390 -
Phco4g00157 468 Coils Coil 131 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00157 Phco-Chr4 939717 942387 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco4g00157 HSF_DNA-bind 1.2e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00157 4 939717 942387 Phco4g00157 4 939717 942387 ECH
Phco4g00157 4 939717 942387 Phco6g02574 6 47301138 47309547 PCT