Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00152 ATGTTAGTTTTATCCTCCTCTTCAAAAACACTTCCAAGGTACATGGATTCTTTTGCTGGAGTGAAGATGAGAACACCAAGCAGTGATGAAAGTGGTTTGAAGAAGGGGCCATGGAGCCCAGAAGAGGATAAAATACTAGTGGATTACATTCAGAAGCATGGCCATGGGAGTTGGAGAGCCCTTCCAAAGCTTGCAGGGTTAAACAGATGTGGAAAGAGTTGCAGACTGAGGTGGACTAATTACCTCAGACCTGATATCAAAAGAGGAAAATTCTCTGATGAAGAAGAAAAACTCATCATCAATTTACATGCAGTTCTTGGGAATAAGTGGGCAGCTATAGCCTCTCATCTACCAGGAAGAACTGATAATGAAATTAAGAATCTGTGGAACACACATTTAAGGAAAAAGCTTTTGAAAATGGGGTTAGATCCAGTGACTCACCGTCCAAGAACTGATCACCTAAACCTTCTTACCAGTCTACAGCAGATATTGGCAGCTGCAAAAATTGTGAGCAGTTACACAAACCCTTGTGACATAAACAATGCTCTAAGGCTACACTCAGATGCCACACAACTAGCCAAATTCCAATTATTGCAACAAAACATGTTTCAAGTCACTGGTGCCACAACCTCAAACTCTGACCCACTCAACCCTTTTGTACCATTAAACTCACTACAAGATGGTTTTCTGAATGATGTTTTGGGGTTGAATCACTCTAATCTCCAAAACCTTCATCATGATGATAATTCACTTTTTCAAATCCACCCCAATTTCCAAAACTTTGAGGCCCTTCAGCAGCCAACAAAAGATGGTTCCTTAAATGCTGACCTTTCACCATCAAATTCTCTTCCAAATCTGGTTTCTGCCTCCCCTGAACGTTCCCCAGTGAAGGAAGCAGAAAACGTTAATGCAAACTCAAAGGATTGTTCTAACCCTTGTTCCACCACCTTTGAGTTAACGTGGGGAGATTTCATGGATGAAGATGCAACCGAAACTTATTGGAAAGGTTTCATTGACCAACATTCTAACCAGACATGGTCAACAGTCCCATGA 1053 0.4131 MLVLSSSSKTLPRYMDSFAGVKMRTPSSDESGLKKGPWSPEEDKILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEKLIINLHAVLGNKWAAIASHLPGRTDNEIKNLWNTHLRKKLLKMGLDPVTHRPRTDHLNLLTSLQQILAAAKIVSSYTNPCDINNALRLHSDATQLAKFQLLQQNMFQVTGATTSNSDPLNPFVPLNSLQDGFLNDVLGLNHSNLQNLHHDDNSLFQIHPNFQNFEALQQPTKDGSLNADLSPSNSLPNLVSASPERSPVKEAENVNANSKDCSNPCSTTFELTWGDFMDEDATETYWKGFIDQHSNQTWSTVP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00152 350 MobiDBLite consensus disorder prediction 269 309 - -
Phco4g00152 350 CDD SANT 90 133 IPR001005 -
Phco4g00152 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Phco4g00152 350 FunFam MYB-related transcription factor 34 87 - -
Phco4g00152 350 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Phco4g00152 350 SMART sant 34 84 IPR001005 -
Phco4g00152 350 SMART sant 87 135 IPR001005 -
Phco4g00152 350 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Phco4g00152 350 FunFam Transcription factor MYB39 90 151 - -
Phco4g00152 350 Pfam Myb-like DNA-binding domain 88 133 IPR001005 -
Phco4g00152 350 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Phco4g00152 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Phco4g00152 350 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Phco4g00152 350 Gene3D - 34 87 - -
Phco4g00152 350 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 23 259 - -
Phco4g00152 350 CDD SANT 37 82 IPR001005 -
Phco4g00152 350 MobiDBLite consensus disorder prediction 269 289 - -
Phco4g00152 350 Gene3D - 90 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00152 Phco-Chr4 905021 906626 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco4g00152 Myb_DNA-binding 9.2e-17 CL0123