Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00118 ATGGTTTTGGAGTCTAAAGAAACGGCGCAAAAGGAGAGAGAGTTGTTACACACCCCACTTACTTGGGACAAAGATTCCGACTCACACACAGAGACTAATGTTGTGGTGCTACCTCTCTGGACGTTGGACATGGACACCCCAGAGAGGAACCAGATCAGTGCTACCCTCACCAAGTTTGAGGATTCACCTGTTTTCAATTATATCAACAGTTTGTCTCCTATAAAGCCCGTTAAGTCTGTTCCCATTAGTCAGACTTTCAATTCACTGAGCTTTTCGTCCCCTCCATCCGTTTTCACATCACCCCACGTCAGCTGTCTCAAGGAATCTAGATTCCTCAGAAGACATATCCCATTGGGCACATCAAAGCCTAAGGTTTCTTCTGAAGATGCAAATAAAGCTCACACAAGTGAAGAGACTCTTGCAGATTCTACACGTGCATGTCATAACTCGAGTGAATTACAGGAAAACACCGATAGAGGGATTTCTGTAGAAGATGCTTCAATTGAGCTATCTAGCGAGCACCTAAAATTCTCAGTTGAGCCACAGCAAACTCTAAAATATAACAGTTGTGGTAGCCCTGGCTATGATCCCCCACTTTGTGGTAATGAGGGTAACACTCTTTTGGAACTGCCCGATGAGGCAGCAGCAGATGCTGGCTACGTTCAGGAAGGGTGTAAAACTGATTCAAGTGAAGGGCATCTTCAGAAAATATGTCAGACGGAGCCAAAGAGTGAAGATCCAGACTGTTATTGGGATAGTTTAGTTCCTGATGGCCCTGATATGCTAATTTTTAATTCCCCAGGTGAAGCAGAAGCTTTTAAGGGTCTGATGCACAAACCTTTGGACTCTTCTATTCGACTGAGCGATTTTATGTCTGTGCTGCCACTTTCTACCATCCATAATGGTAGGAAAATGTACTTTGTTGATTCGGTTGCTTCAGGTTCTGAACATGAAATTGGAGATCACTGTTCTGAGCCAATGACAACAGCCACGGACACGGACCAAACACAGGATAATCTTGCCGATGTCGTTTTCGTGACTAGCCATTCTAATGAGCACGCTAATGATCAGCTTGTTTCTGTCACTCACCGAGCCATACGGAGGCGTTGTCTAGACTTTGAGATGGCCAATGTACAAAGGAAGAACTCTGATGATAATTCAAACGCCGGTTCAAGTACATCCGAGTTTGATGAGAGGAATGTTGCCAATGAAAAGCAACAGCTTCCAGCAAAACTCAATGGGAATTTTCAGACGGGAATTTTGCAGGGAATTGGTCTACACCTGAATGCACTTGCTGCCTTGAAAGAATACAAGGGCATACAAATTGAAAATTTGTCTTCTGGAAGACAACTCAGTCTGCCCGGCTCTACTTTGCAAATCTCTACAAGCCAAGAACATCAGCATCTATCGTTGGTACCTGTATCATCTGAAAGAGAGCTGGATTCATCAGACAATGGGCTTCACCCTGCTGAAGATTGTTCCCAGCCATCGGTTTACATGGCTGGTGAAGACTTCAATAAGAATAGTAGCCCCAGAAAGAAAAAGCGTAAGTTGGAGACACCTGGAGAAACCGAGGGCTGTAAACGCTGCAATTGCAAGAAGTCAAAGTGTTTAAAGCTTTACTGCGAGTGCTTTGCTGCTGGTGTCTACTGCATAGAACCCTGCTCCTGTCAGGATTGCTTCAACAAACCTATTCATGAAGACACTGTTCTTCAAACTCGCAAGCAGATTGAATCTCGTAATCCTCTTGCATTTGCTCCTAAAGTCATCAGAAGTTCTGATTCTGTTCCTGAAATTGGGGATGATCCAAATAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGCAACTGCAAAAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTCGGTTGCTCCATCAGCTGTAGATGTGAAGGGTGCAAGAATGCTTTCGGCAGAAAAGATGGTTCTGCTCCTGTAGGCATAGAAACTGACTCAGAAGAGATAGAAGCAACTGACAAGGGTGTGGCAGAAAAAGCTTCACAGAAAACTGAAATTCAGAACACTGAAGATCATCCGGATTCTGCTACTGTGTCAACACCATTACGACTTTCCAGGCCATTGCTTCCGTTGCCCTTTTCGTCAAAGGGAAAGGCACCAAGATCCTTTGTTACCACCATCACAAGCTCTGCATTATTTGCCAGCCAAAAGCTTGGGAAACCAAACTCTCTTTGGTCTCAATCTAAGCATTTTCAAACTGTCCCAGATGACGAAATGGCGGATATTCTCCTAGGTGATACCTCTCCTATCTCATGCATCAAAACTTCTTCTCCAAATGGCAAGAGAATCTCCTCTCCTAGCTGTGACTTGGGATCATCTCCTAGTCGCAGAGGTGGCAGGAAGTTGATATTACAATCCATTCCTTCATTTCCTTCTCTCACCCCTCACCCTTAG 2451 0.4431 MVLESKETAQKERELLHTPLTWDKDSDSHTETNVVVLPLWTLDMDTPERNQISATLTKFEDSPVFNYINSLSPIKPVKSVPISQTFNSLSFSSPPSVFTSPHVSCLKESRFLRRHIPLGTSKPKVSSEDANKAHTSEETLADSTRACHNSSELQENTDRGISVEDASIELSSEHLKFSVEPQQTLKYNSCGSPGYDPPLCGNEGNTLLELPDEAAADAGYVQEGCKTDSSEGHLQKICQTEPKSEDPDCYWDSLVPDGPDMLIFNSPGEAEAFKGLMHKPLDSSIRLSDFMSVLPLSTIHNGRKMYFVDSVASGSEHEIGDHCSEPMTTATDTDQTQDNLADVVFVTSHSNEHANDQLVSVTHRAIRRRCLDFEMANVQRKNSDDNSNAGSSTSEFDERNVANEKQQLPAKLNGNFQTGILQGIGLHLNALAALKEYKGIQIENLSSGRQLSLPGSTLQISTSQEHQHLSLVPVSSERELDSSDNGLHPAEDCSQPSVYMAGEDFNKNSSPRKKKRKLETPGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSAPVGIETDSEEIEATDKGVAEKASQKTEIQNTEDHPDSATVSTPLRLSRPLLPLPFSSKGKAPRSFVTTITSSALFASQKLGKPNSLWSQSKHFQTVPDDEMADILLGDTSPISCIKTSSPNGKRISSPSCDLGSSPSRRGGRKLILQSIPSFPSLTPHP 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00118 816 MobiDBLite consensus disorder prediction 381 401 - -
Phco4g00118 816 MobiDBLite consensus disorder prediction 142 159 - -
Phco4g00118 816 MobiDBLite consensus disorder prediction 473 527 - -
Phco4g00118 816 SMART CXC_2 525 566 IPR033467 -
Phco4g00118 816 SMART CXC_2 611 652 IPR033467 -
Phco4g00118 816 MobiDBLite consensus disorder prediction 381 397 - -
Phco4g00118 816 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 614 649 IPR005172 -
Phco4g00118 816 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 528 563 IPR005172 -
Phco4g00118 816 MobiDBLite consensus disorder prediction 119 159 - -
Phco4g00118 816 MobiDBLite consensus disorder prediction 772 816 - -
Phco4g00118 816 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 44 815 IPR044522 GO:0003700
Phco4g00118 816 MobiDBLite consensus disorder prediction 127 141 - -
Phco4g00118 816 MobiDBLite consensus disorder prediction 507 527 - -
Phco4g00118 816 MobiDBLite consensus disorder prediction 772 791 - -
Phco4g00118 816 ProSiteProfiles CRC domain profile. 526 651 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00118 Phco-Chr4 739419 744235 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Phco4g00118 TCR 2e-11 No_clan