Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00096 ATGGAATCAGAAGTGAGATCGGGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAATTCCTCGGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGCTTGGATGCTACTGCTTCCACCTCTAGGAAGTTCTATGAATCCAGGAAAAGGGCCAACATCAACGTGCCCGTCAGTGATTCTGGATCAAGTGACGAGTTGCTGATTCCACCTGGTAGAAGGCTTGGGTCTGAGACTATTCGTGTTTGCAATGGTTTGGCTGCCTCTGAGCGGGGTGGGAGTGAGATTAGTCGGAAGAGGGACAGAATGGAACGAATTAGGGGTGCGGATAAAGGTTTGGAGCAGTGGGTAAGTAAGCGTAGTAAGTTGGACGTGTACAATTTAGAAGAATATGATGGTATGGATGTGGAGAACATGAGGAGGAGGCATTTGGATGGTAATGCAGTTGGTTTTGGTGGAAGAAGTTTTATGGGATCGGTTCATGCTACTAGGAGTGGCATTGATAGGGAATTAATGAATGGGTCAAGTGGACGTCTTCTTGATAAGCGAAAGAACTCTTATGTCGACAGGTCAAGTGGCTTGTTTCCAGGAGATAATCTTGATCGCATTAGGTTCATGACTAACAGAGATGGCGTTCGGGCACCTATACCCTTGCAGAGGGAGAAGTTTAATTCGGATGAGTCTATTAGGGTTCAGGGGAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGTGTGGGCCATCAGAACAGTATTACAATCATCACAAACCTGTGGAAAGCTGGCAAAGGTTGAAACCTGAAGAGCCCATCAAGAGGATGAAGATTGAAGAGACTGCCAAGAGGAATGTTCCCACTCGTCCTTCATCAAACCTGGAAACAAAACCTGTTGAGAAACCAGGATTACTCAAGAGGCCTGAGAAGAAACAGATAGCATCAAGAAAATACTTGTCAAGCAAGGATAGCAAGGGAGATGAGGGGGGTTCAGATAACAGTGACACATCATTAAATCCCGGGGTAAGAAATTCTGTAGCTCGTAAGCCTGTAAAAAAGATGTTCTCCGAGGATGAACAGACTCCTGTGCATGATAAACTCTCAACCTCAAAAGCGAAAGAAGGAAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAACTACGAGAGCGAATAAGGGAGATGCTGCTGACTTCAGGTTGGACCATAGACTATAGACCTCGAAGGAACCGAGACTACCTGGATGCAGTTTACATTAATCCTGCAGGTACAGCCTATTGGTCTATCATCAAGGCCTATGGCGCCCTTCAAAAGCAATTGAATGAAGATGCTAATGAGGTCAAAGCCAAAGGGGATAGTTCTTCTTTTGCACCTATTGCAGATGATGTGCTCAGTCAGCTAACAAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGAAAAACAAGAAGAAAAAATATGATAGTGAAAGTGATAATGAAAAAGAGCCTGAAATAAGAAGATCTGCCAGCAACAAGCTTGATATGAATAGCACTGATAGTGATAACAATGAGGAGAAATTAAGCTCCTTTATAAAACAGGGAAGTAAGTCGATTAAAAGTAAAATGTTTGAAAGTAACGTTATCAGTGCTCGCTCTAAAATCCAGAATGCTACCCATCACTCAATTGACGGAATAGAAAAATCATCTGGATGTGATTCTCGTATACATGGACGGAAGAGTAATCACGGAAGATCTACCTTGTTAATTCGCAGTTCTAACAAAAGATCAAATTCAGAATCTGATGGCTTTGTCCCATATACGGGAAAACGGACAGTTCTTGCCTGGTTGATCGACTCTGGAACAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAGAAAGTCCTGCTTGAGGGGTGGATCACAAGAGATGGCATACATTGTGGCTGCTGTAGTAAAATCCTCACAGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACAGCCATATCAAAATATATATTTGGAATCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCGTGGAATAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTCAGTAGATACTGACGGTGATGATCCAAATGATGATACATGTGGTATTTGTGCAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGATGCTTCCTCCTGGTGAATGGAATTGTCCAAATTGCTTATGTAAATTTTGTGGCATAGCTGAACTTTCTGAAAAAGATGACGCGTCAGTGCCTATCATACATACCTGCAACTTATGTGAGAAAAAATATCATGACTCTTGCGCTAATGAGATGGATGCGCTTCCTAATAACCTCAATACATCAAGCCTTTCTTTTTGTGGGAAAGAGTGCAGAGAGCTTTCTGAACAATTGAAGAAGTATCTTGGTACCAAGCATGAACTAGAAGCAGGTTTTTCATGGTCTCTTATTCATAGAACAGATGAAGACTCTGAGGCAGCTTGCAAGGGAATTACTCAGAGGGTAGAATGTAATTCAAAACTGGCTATTGCACTGTCTGTGATGGATGAATGTTTTTTACCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCGTAACATTTTATATAATAGTGGATCAAACTTTAATCGGTTGAGCTATGGTGGCTTTTACACTGCTATTTTGGAGAGAGGGGATGAAATCATTTCTGCGGCATCTATCAGGTTCCATGGAACTGAGATAGCTGAGATGCCATTCATTGGAACTCGTCACATATATAGGCATCAAGGGATGTGTCGCCGGCTTTTTTCTTCCATTGAATCGGCCCTTTGCGCTATGAAGGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTAACACATACATGGACAACTGTTTTTGGCTTCACACATCTGGACGAATTACTCAGACAAGAAATGAGGTCACTGAATATGGTGGTCTTCCCTGGTATTGATATGTTACAGAAGCTGTTAGTGGAAGGTTCTGATAAAATGGGAAATGGAGACAACGATTTTATCCATACCAAAATGGGAAATAGGTCAGATATGGGCTCTTCAACTCCACAAGATCCTCGTGGAAGTGATGATGTTAGTTCTAATCCTGCTAATGAGACAAATGATGAATGCAGCGATGCTTCTCGAGAAATAAACCAAGTTTTGGTTGACGGGATTCTCTGTTCCAAATCTCATTCTGAGGAAATGGTCTCTGATTCAATTTCAGATAAATGTGTTTCTCCTTCTAGAACTAGTCACAGTGCACTAGAAATGAAGAATAAAGTGGTGGCTGCTCCTCCTGTTGATAAATTAAATCCCACTTCTGTGAGAAGTCACCCAGAAGATATTCCAAATGTTCAAGCTTTGGTTCAGGAAACTGCTTGTTCTGATCCATGTTCAGAAGAAAACCTTGACAAGAAATGTCGCACGTTCACTGCTATGAATTGTGATTCGCTGGAGCTTGACATTAATCCAGTTTTGAATTCTCAAAAGTCAGACAATTCTCCACCTACTAAAGAGGCTTATATGAATGATGCTCTTGAAGCTGTTACTTCAGGGATTTTATCAGAAGATAATATTATTCCAAAGGGAAGTAATCAAAATGTAGATGTCTCCATTTCTGCTCTCAATCATGACGATGAGAGTTTGTTGCAACTAGGATCTGGTTCCAACTCTGAAAATGGATGTAAAAATGGGAAGGATTTGCTTTTGAGCCCAATAGTTGCTTCAAATGAAACATGTGTGGATGAAAATGGCGTAAATGCTTCCGGTGATAGTTCCGAGACTGTTGTGGTCTAA 3837 0.4136 MESEVRSGGSGVVVKSRNSSGCLIVRKKGDGLDATASTSRKFYESRKRANINVPVSDSGSSDELLIPPGRRLGSETIRVCNGLAASERGGSEISRKRDRMERIRGADKGLEQWVSKRSKLDVYNLEEYDGMDVENMRRRHLDGNAVGFGGRSFMGSVHATRSGIDRELMNGSSGRLLDKRKNSYVDRSSGLFPGDNLDRIRFMTNRDGVRAPIPLQREKFNSDESIRVQGKNGVLKVMVNKKKVCGPSEQYYNHHKPVESWQRLKPEEPIKRMKIEETAKRNVPTRPSSNLETKPVEKPGLLKRPEKKQIASRKYLSSKDSKGDEGGSDNSDTSLNPGVRNSVARKPVKKMFSEDEQTPVHDKLSTSKAKEGKIKRGSGTEKQKLRERIREMLLTSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYGALQKQLNEDANEVKAKGDSSSFAPIADDVLSQLTRKTRKKMEKELKNKKKKYDSESDNEKEPEIRRSASNKLDMNSTDSDNNEEKLSSFIKQGSKSIKSKMFESNVISARSKIQNATHHSIDGIEKSSGCDSRIHGRKSNHGRSTLLIRSSNKRSNSESDGFVPYTGKRTVLAWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQIDAWNRQEHSEKIGFHSVDTDGDDPNDDTCGICADGGDLICCDGCPSTFHQSCLDIQMLPPGEWNCPNCLCKFCGIAELSEKDDASVPIIHTCNLCEKKYHDSCANEMDALPNNLNTSSLSFCGKECRELSEQLKKYLGTKHELEAGFSWSLIHRTDEDSEAACKGITQRVECNSKLAIALSVMDECFLPVIDRRSGINLIRNILYNSGSNFNRLSYGGFYTAILERGDEIISAASIRFHGTEIAEMPFIGTRHIYRHQGMCRRLFSSIESALCAMKVEKLVIPAIAELTHTWTTVFGFTHLDELLRQEMRSLNMVVFPGIDMLQKLLVEGSDKMGNGDNDFIHTKMGNRSDMGSSTPQDPRGSDDVSSNPANETNDECSDASREINQVLVDGILCSKSHSEEMVSDSISDKCVSPSRTSHSALEMKNKVVAAPPVDKLNPTSVRSHPEDIPNVQALVQETACSDPCSEENLDKKCRTFTAMNCDSLELDINPVLNSQKSDNSPPTKEAYMNDALEAVTSGILSEDNIIPKGSNQNVDVSISALNHDDESLLQLGSGSNSENGCKNGKDLLLSPIVASNETCVDENGVNASGDSSETVVV 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00096 1278 MobiDBLite consensus disorder prediction 297 327 - -
Phco4g00096 1278 MobiDBLite consensus disorder prediction 347 383 - -
Phco4g00096 1278 MobiDBLite consensus disorder prediction 272 383 - -
Phco4g00096 1278 Coils Coil 462 489 - -
Phco4g00096 1278 MobiDBLite consensus disorder prediction 469 521 - -
Phco4g00096 1278 MobiDBLite consensus disorder prediction 500 521 - -
Phco4g00096 1278 MobiDBLite consensus disorder prediction 469 499 - -
Phco4g00096 1278 MobiDBLite consensus disorder prediction 1017 1060 - -
Phco4g00096 1278 SMART PHD_3 707 748 IPR001965 -
Phco4g00096 1278 SMART PHD_3 749 806 IPR001965 -
Phco4g00096 1278 ProSiteProfiles Zinc finger PHD-type profile. 705 750 IPR019787 -
Phco4g00096 1278 PANTHER PHD FINGER PROTEIN 12 334 1145 IPR042163 GO:0003714|GO:0045892
Phco4g00096 1278 MobiDBLite consensus disorder prediction 1027 1055 - -
Phco4g00096 1278 CDD PHD2_CHD_II 708 747 - -
Phco4g00096 1278 ProSitePatterns Zinc finger PHD-type signature. 708 747 IPR019786 -
Phco4g00096 1278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 801 IPR013083 -
Phco4g00096 1278 SUPERFAMILY FYVE/PHD zinc finger 693 749 IPR011011 -
Phco4g00096 1278 Pfam PHD-finger 708 749 IPR019787 -
Phco4g00096 1278 Pfam Tify domain binding domain 630 680 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00096 Phco-Chr4 644199 649936 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco4g00096 TDBD 6.9e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00096 4 644199 649936 Phco4g00096 4 644199 649936 ECH