Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00095 ATGGAATCAGGCGTGAGATCGGGTGGTTCTGGGGTTGTTGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGATTGGGTGCTACTGCTTCCTCGTCTCGGAAGCTCTATGAATCGAAGAAAAGGGCCAACATCAAAGTTTCCTTGAGTGATTCTGGATCAAGCGACGAGCTGCTGGTACCTCCTGGTAGAAGGCTTGGTCCTGAGACTATTCGAGTTTGCAATGGTTTGGCTGCCTCTGAGCGGGGTGGGAGTGAAATTAGTCGGAAAAGGGACAGAGTGGAACGAATTAGGGGTAGTGGGGAAGGTATTGCTGCGGAGAAATGTTTGGACCCGAGGGAAAGGAAGCGTAGTAAGTTGGATGTGTATGATTTTGATGAATATGATGGAATGGGTGTGGAAAACACAAGGAGGAGGCATTTAGATGATAATGGAGTTGGTCATGGAGGAGGAAGGTTTATGGGATCAGTGCATGCTGCTAGAAGTGGCATTGACAGGGAATTCAAAGCAGGGTCAAGTGGACGAGTTCTCGATAAGAAAAAGAACTCCTATGGTGACAGGCCTAGTGGCTTGTTTCCGGTGGATGATGTTGATCACAGTAGGTTCAAGATAAACAGGGACGGGACTCGGGTACCTATATCCTCGCAGAGGGAGAAGTTTTATTCAGATGAGTCCATCAGGGTTCAGGGGAAGAATGGCGTTTTGAAGGTAATGGTTAATAAGAAGAAGTTGCGTGGGCCATCAGAACAGTATTATGATCATCACAAGCCTGTAGAAAGCAGGCAAAGGTTGAAAACTGAAGAGCCTACCAAGAGGATAAAGACTGAGGAGACTGTCAAGAAGAATGTTCCAAGTCGTCCTTCATCATACATGGAAACAAAACCTGTTGAGAAACCAAGATTAGTCAAGAGGCCAGAGAAGAAACGGATAACATCCAGAAAATCCTTGTCAAGCAAGGACAGTAAGGGTGATGAGGGGGATTCAGATAACAGTGATGCATCACTGAATCCGGGAATAAGAAATACTGAAACTCATAAGCCTGCAAAAGAAATAATTTCTGAGGATGAGCAGACACCTGTGCTCGAAAAACTCCCCACCACAGGAACAAAAGATGGGAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGAGAGCGAATAAGGGAGATGCTGCTGACTTCAGGTTGGACTATAGACTATAGACCTCGGAGGAACAGAGACTACCTGGATGCAGTTTACATTAATCCAGCAGGTACAGCCTATTGGTCCATCATCAAGGCCTATGATGCGCTTCAAAAGCAATTGAATGATGATGCTAAGGAGGTCAAGGCCAAAGGGGATAGTTCTTCTTTTGCTCCTATTGCAGATGAGGTGCTCAGTCAGCTTACGAGGAAAACTAGAAAGAAAATGGAGAAAGAATTGAAAAAGAAGAAGAAAAAATATGACAGTGAAAGTCGTAATGAAAAAGAGCCTCAAAGAAAGAGATCCGCCAGCAACAAGTGTGATACGAATAGCACAGATAGTGACAGCAATGAGGAGAAGTTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGTCTGAAAATACCATTACCACTGCTCGCACTAAAATCCAGAATGCTACCCATCACTCAAGTGATGGAATAGAAAAATCATTATTTGGAGGTGATCCTCATATACATGGACGGAAGAGTAAAAAACATGGAAGGTGTACCTTGCTAGTTCGCAGTTCTAACAAAGGATCAAATTCGGAATCTGATGGCTTTGTCCCATATGTGGGGAAAAGGACAGTTCTTGCCTGGTTAATTGACTCTGGAACTGTAGAGTTAAGTCAAAAGGTTCAGTACCGCAGACGGAAAAAAGTCCTGCTGGAGGGGTGGATCACAAGAGATGGCATTCATTGTGGCTGCTGCAGTAAGATCCTTACAGTTTCAAAGTTTGAACTTCATGCAGGAAGCAAATTGCCACAGCCATATCAAAATATATATTTGGAATCTGGTGTTTCTCTTCTACAATGCCAAATAGATGCATGGAACAGACAGGAGCATTCTGAAAAAATTGGTTTCCATTCAGTGGATATTGATGGTAATGATCCAAACGATGATACATGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGTTGCTTGGATATTCAAATGCTTCCTCCTGGTGAATGGCACTGTACAAATTGCACCTGTAAATTTTGTGGCATAGCCACTAGGACATCTGAAAAAGATGATGCATCTGTGTATGTCCTACGGACATGCAACTTATATCATGACTCTTGCTCTGAGGAGATGGACACCCATCCTAATAACTTGAATACTTCAAGCCTTTCTTTTTGTGGGAAAGAGTGTAAAGAGCTTTCTGAACACTTGAAGAAATACCTTGGTACCAAGCATGAACTGGAAGCGGGTTTTTCATGGTCTCTCATTCATAGAACAGATGAAGACTCTGAGGCAGCTTGCAGGGGAATTACCCAGAGAGTTGAATGCAATTCGAAGTTGGCTATTGGACTGGCTGTGATGGATGAATGCTTTTTACCTGTTGTTGATCGGAGGAGTGGGATCAATTTAATCCGTAACGTTTTATATAATACTGGATCAAACTTTAGCCGGTTGAGCTATGGTGGATTTTATGCTGCTATTTTGGAAAGAGGGGATGAAATAATTGCTGCAGCTTCTATCAGGTTGCATGGAACTAAGATAGCAGAGATGCCATTCATTGGAACTCGCCATGTATATAGGCGCCAGGGGATGTGCCGCCGGCTCTTTTCTGCCATTGAATCGGCCCTTTGCTCTCTGAAAGTTGAAAAACTAGTTATTCCTGCAATTGCTGAACTCACGCATACATGGACAACAGTTTTTGGCTTCACACATCTAAACAATTCACTCAGGCAAGAAATGAAGTCACTGAATATGATGGTCTTCCCTGGTATAGATATGTTACAGAAGCTGTTAGTTGAACAAGGAAAACATGAGGGTTCTGAGAAAATGGGAAATGGAGGCAATGATTTTACCCATACGAAAATGGGAAATAGGTCAGATATGGGTTCTTTAACTCCACAAGATGCTCATGGAAGTGATGATATTAGTTCAAATCCTGCTAATGAGATGAACGATGAATGCAGTGATGCTTCTGAAGAACTAAACAACCATGTTTTGGTTGAGGAGACTCTCTGTTCCAAATCTGATTCCGAGGAAATGGTGTCTGATTCAGTTTCAGATAAATGTATTTCTCATTCTAGGACTAGTCACAGTGTACTAGAAATGAAGAATAAAGTGGTGGCTGCTGCTCCTGTTGATAAATTAAATTCTCCTTCGAAATGTCCGTCCATTTCTCCTAATGACAATTCTGTGAGTAGTCACTCAGAAGATATTCCAATCGTTCAAGCTTTGGTTCAGGAAACTTCTTATTCTGATCCATGTTCACCAGAAAACCTTGACAAGAAATGTCACTCATTCACTGCTATGAATTGTGATTCATCAGAACTTGACATTAATCCAGTGTTGGGTTCTCAAAAGGCAGGCAATACTTCACCTACTAAAGAGGTTTGTATGAATGACGCCCTTGAAGCTGTTCCTTCAAGTAATTTACCGGAAGAGAATACTAGAAAGGGGAATAATCAAAATATAGATGACTCCAGTTCTGCTCTCAAACTTGCTGATAAGAGTTTGTTGCAGGTAGAATCTGATTCCAAAAATGAAATTGGATGTGAAAATGAGAAGGATGTAAGTGCTGTAAATGCTTCTGGTGTTAGTTCTGAGACTGTTCTGGTCTAG 3855 0.421 MESGVRSGGSGVVVKSRNSSGCLIVRKKGDGLGATASSSRKLYESKKRANIKVSLSDSGSSDELLVPPGRRLGPETIRVCNGLAASERGGSEISRKRDRVERIRGSGEGIAAEKCLDPRERKRSKLDVYDFDEYDGMGVENTRRRHLDDNGVGHGGGRFMGSVHAARSGIDREFKAGSSGRVLDKKKNSYGDRPSGLFPVDDVDHSRFKINRDGTRVPISSQREKFYSDESIRVQGKNGVLKVMVNKKKLRGPSEQYYDHHKPVESRQRLKTEEPTKRIKTEETVKKNVPSRPSSYMETKPVEKPRLVKRPEKKRITSRKSLSSKDSKGDEGDSDNSDASLNPGIRNTETHKPAKEIISEDEQTPVLEKLPTTGTKDGKIKRGSGTEKQKLRERIREMLLTSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDAKEVKAKGDSSSFAPIADEVLSQLTRKTRKKMEKELKKKKKKYDSESRNEKEPQRKRSASNKCDTNSTDSDSNEEKLSSFIKQGSKSMKNKMSENTITTARTKIQNATHHSSDGIEKSLFGGDPHIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYVGKRTVLAWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQIDAWNRQEHSEKIGFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCTNCTCKFCGIATRTSEKDDASVYVLRTCNLYHDSCSEEMDTHPNNLNTSSLSFCGKECKELSEHLKKYLGTKHELEAGFSWSLIHRTDEDSEAACRGITQRVECNSKLAIGLAVMDECFLPVVDRRSGINLIRNVLYNTGSNFSRLSYGGFYAAILERGDEIIAAASIRLHGTKIAEMPFIGTRHVYRRQGMCRRLFSAIESALCSLKVEKLVIPAIAELTHTWTTVFGFTHLNNSLRQEMKSLNMMVFPGIDMLQKLLVEQGKHEGSEKMGNGGNDFTHTKMGNRSDMGSLTPQDAHGSDDISSNPANEMNDECSDASEELNNHVLVEETLCSKSDSEEMVSDSVSDKCISHSRTSHSVLEMKNKVVAAAPVDKLNSPSKCPSISPNDNSVSSHSEDIPIVQALVQETSYSDPCSPENLDKKCHSFTAMNCDSSELDINPVLGSQKAGNTSPTKEVCMNDALEAVPSSNLPEENTRKGNNQNIDDSSSALKLADKSLLQVESDSKNEIGCENEKDVSAVNASGVSSETVLV 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00095 1284 MobiDBLite consensus disorder prediction 506 536 - -
Phco4g00095 1284 MobiDBLite consensus disorder prediction 1131 1147 - -
Phco4g00095 1284 MobiDBLite consensus disorder prediction 249 287 - -
Phco4g00095 1284 SMART PHD_3 715 756 IPR001965 -
Phco4g00095 1284 MobiDBLite consensus disorder prediction 484 505 - -
Phco4g00095 1284 ProSiteProfiles Zinc finger PHD-type profile. 713 758 IPR019787 -
Phco4g00095 1284 MobiDBLite consensus disorder prediction 1026 1065 - -
Phco4g00095 1284 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 898 966 IPR016181 -
Phco4g00095 1284 SUPERFAMILY FYVE/PHD zinc finger 706 761 IPR011011 -
Phco4g00095 1284 Pfam Tify domain binding domain 638 688 IPR032308 -
Phco4g00095 1284 ProSitePatterns Zinc finger PHD-type signature. 716 755 IPR019786 -
Phco4g00095 1284 Coils Coil 468 495 - -
Phco4g00095 1284 CDD PHD4_NSD 716 755 - -
Phco4g00095 1284 MobiDBLite consensus disorder prediction 1127 1147 - -
Phco4g00095 1284 MobiDBLite consensus disorder prediction 1221 1240 - -
Phco4g00095 1284 MobiDBLite consensus disorder prediction 374 388 - -
Phco4g00095 1284 PANTHER PHD FINGER PROTEIN 12 379 1171 IPR042163 GO:0003714|GO:0045892
Phco4g00095 1284 MobiDBLite consensus disorder prediction 551 579 - -
Phco4g00095 1284 Pfam PHD-finger 716 758 IPR019787 -
Phco4g00095 1284 MobiDBLite consensus disorder prediction 249 388 - -
Phco4g00095 1284 MobiDBLite consensus disorder prediction 1017 1070 - -
Phco4g00095 1284 MobiDBLite consensus disorder prediction 474 536 - -
Phco4g00095 1284 Coils Coil 433 453 - -
Phco4g00095 1284 CDD NAT_SF 907 966 - -
Phco4g00095 1284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 827 IPR013083 -
Phco4g00095 1284 MobiDBLite consensus disorder prediction 349 363 - -
Phco4g00095 1284 MobiDBLite consensus disorder prediction 1218 1240 - -
Phco4g00095 1284 MobiDBLite consensus disorder prediction 317 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00095 Phco-Chr4 633677 640643 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco4g00095 TDBD 6.9e-22 No_clan